Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 36545 | 0.69 | 0.601164 |
Target: 5'- uUCAAGCucuUCGCCggUUC-UCACaGCCCg -3' miRNA: 3'- cAGUUCG---AGCGGa-AGGuAGUGcCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 53718 | 0.69 | 0.569105 |
Target: 5'- cGUCGuuCUUgGCC-UCCGUCugGGCCUc -3' miRNA: 3'- -CAGUucGAG-CGGaAGGUAGugCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 39097 | 0.69 | 0.569105 |
Target: 5'- cGUCGAcGUUgaCGCCUUCC-UCGuCGGCCa -3' miRNA: 3'- -CAGUU-CGA--GCGGAAGGuAGU-GCCGGg -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 12525 | 0.69 | 0.569105 |
Target: 5'- cGUCAc-UUCGCCguccucgUCCGUCAcCGGCUCa -3' miRNA: 3'- -CAGUucGAGCGGa------AGGUAGU-GCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 23950 | 0.68 | 0.622676 |
Target: 5'- cGUCAGGC-CGCUgaUCCAgCugGGCUg -3' miRNA: 3'- -CAGUUCGaGCGGa-AGGUaGugCCGGg -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 22910 | 0.68 | 0.633448 |
Target: 5'- -gCGGGgUCGCCccggcgaugCCGUaguaGCGGCCCa -3' miRNA: 3'- caGUUCgAGCGGaa-------GGUAg---UGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 26318 | 0.68 | 0.64422 |
Target: 5'- -gCGGGCaUCGCCg-CCGUgGCGGgCCa -3' miRNA: 3'- caGUUCG-AGCGGaaGGUAgUGCCgGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 51326 | 0.68 | 0.676432 |
Target: 5'- cUCGGGCUUGagaaucUCCAUgACGGCCg -3' miRNA: 3'- cAGUUCGAGCgga---AGGUAgUGCCGGg -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 62967 | 0.67 | 0.687102 |
Target: 5'- -cCAGGC-CGCUUUguagCgGUCGCGGUCCu -3' miRNA: 3'- caGUUCGaGCGGAA----GgUAGUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 47119 | 0.7 | 0.547966 |
Target: 5'- gGUCGGGCUCGUCgguggggaUgGUCAgGGCCUg -3' miRNA: 3'- -CAGUUCGAGCGGaa------GgUAGUgCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 32156 | 0.7 | 0.516748 |
Target: 5'- cUCGAGgaCGCCUUCCuugCGCugcuuGCCCa -3' miRNA: 3'- cAGUUCgaGCGGAAGGua-GUGc----CGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 16416 | 0.7 | 0.516748 |
Target: 5'- ----uGCUCGgCUUCCGUCGaucCGGCCg -3' miRNA: 3'- caguuCGAGCgGAAGGUAGU---GCCGGg -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 40267 | 0.66 | 0.779589 |
Target: 5'- -gCGGGUcuaucucaUCGCCUcgaUCUgcggcGUCGCGGCCUg -3' miRNA: 3'- caGUUCG--------AGCGGA---AGG-----UAGUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 16727 | 0.79 | 0.167738 |
Target: 5'- -cCGGGCUgaugccCGCCgccUCCAUCGCGGCCUg -3' miRNA: 3'- caGUUCGA------GCGGa--AGGUAGUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 65202 | 0.74 | 0.309816 |
Target: 5'- uUCAGGg-CGCCUUCCAUCAUugccaGGCCg -3' miRNA: 3'- cAGUUCgaGCGGAAGGUAGUG-----CCGGg -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 6921 | 0.74 | 0.325082 |
Target: 5'- uUCAGGCU-GUCg-CCGUCACGGUCCa -3' miRNA: 3'- cAGUUCGAgCGGaaGGUAGUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 38534 | 0.73 | 0.349016 |
Target: 5'- uGUCGuucCUCGCucuCUUCC-UCGCGGCCCu -3' miRNA: 3'- -CAGUuc-GAGCG---GAAGGuAGUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 13536 | 0.73 | 0.365655 |
Target: 5'- uUCAucGGCUCGCCgUUCuCAucgaacagcugcUCACGGUCCa -3' miRNA: 3'- cAGU--UCGAGCGG-AAG-GU------------AGUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 60676 | 0.72 | 0.40868 |
Target: 5'- cGUCGAGCaccacguUCGUCggCCA--GCGGCCCg -3' miRNA: 3'- -CAGUUCG-------AGCGGaaGGUagUGCCGGG- -5' |
|||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 53284 | 0.71 | 0.456666 |
Target: 5'- --gGAGCUCGUagucgUCCAaugUCGCGGCCa -3' miRNA: 3'- cagUUCGAGCGga---AGGU---AGUGCCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home