Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 13536 | 0.73 | 0.365655 |
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Target: 5'- uUCAucGGCUCGCCgUUCuCAucgaacagcugcUCACGGUCCa -3' miRNA: 3'- cAGU--UCGAGCGG-AAG-GU------------AGUGCCGGG- -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 60676 | 0.72 | 0.40868 |
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Target: 5'- cGUCGAGCaccacguUCGUCggCCA--GCGGCCCg -3' miRNA: 3'- -CAGUUCG-------AGCGGaaGGUagUGCCGGG- -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 53284 | 0.71 | 0.456666 |
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Target: 5'- --gGAGCUCGUagucgUCCAaugUCGCGGCCa -3' miRNA: 3'- cagUUCGAGCGga---AGGU---AGUGCCGGg -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 16416 | 0.7 | 0.516748 |
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Target: 5'- ----uGCUCGgCUUCCGUCGaucCGGCCg -3' miRNA: 3'- caguuCGAGCgGAAGGUAGU---GCCGGg -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 32156 | 0.7 | 0.516748 |
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Target: 5'- cUCGAGgaCGCCUUCCuugCGCugcuuGCCCa -3' miRNA: 3'- cAGUUCgaGCGGAAGGua-GUGc----CGGG- -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 47119 | 0.7 | 0.547966 |
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Target: 5'- gGUCGGGCUCGUCgguggggaUgGUCAgGGCCUg -3' miRNA: 3'- -CAGUUCGAGCGGaa------GgUAGUgCCGGG- -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 53718 | 0.69 | 0.569105 |
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Target: 5'- cGUCGuuCUUgGCC-UCCGUCugGGCCUc -3' miRNA: 3'- -CAGUucGAG-CGGaAGGUAGugCCGGG- -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 39097 | 0.69 | 0.569105 |
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Target: 5'- cGUCGAcGUUgaCGCCUUCC-UCGuCGGCCa -3' miRNA: 3'- -CAGUU-CGA--GCGGAAGGuAGU-GCCGGg -5' |
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| 18435 | 3' | -55.7 | NC_004681.1 | + | 69385 | 0.79 | 0.158999 |
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Target: 5'- -gCGAGCUCGUCcacgcggUCCAUCAgauCGGCCCa -3' miRNA: 3'- caGUUCGAGCGGa------AGGUAGU---GCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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