miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 69385 0.79 0.158999
Target:  5'- -gCGAGCUCGUCcacgcggUCCAUCAgauCGGCCCa -3'
miRNA:   3'- caGUUCGAGCGGa------AGGUAGU---GCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 51326 0.68 0.676432
Target:  5'- cUCGGGCUUGagaaucUCCAUgACGGCCg -3'
miRNA:   3'- cAGUUCGAGCgga---AGGUAgUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 18571 0.67 0.687102
Target:  5'- aUC-AGCUgGCCa-CCGaacuUCAUGGCCCg -3'
miRNA:   3'- cAGuUCGAgCGGaaGGU----AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 40267 0.66 0.779589
Target:  5'- -gCGGGUcuaucucaUCGCCUcgaUCUgcggcGUCGCGGCCUg -3'
miRNA:   3'- caGUUCG--------AGCGGA---AGG-----UAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 38534 0.73 0.349016
Target:  5'- uGUCGuucCUCGCucuCUUCC-UCGCGGCCCu -3'
miRNA:   3'- -CAGUuc-GAGCG---GAAGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 13536 0.73 0.365655
Target:  5'- uUCAucGGCUCGCCgUUCuCAucgaacagcugcUCACGGUCCa -3'
miRNA:   3'- cAGU--UCGAGCGG-AAG-GU------------AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 53284 0.71 0.456666
Target:  5'- --gGAGCUCGUagucgUCCAaugUCGCGGCCa -3'
miRNA:   3'- cagUUCGAGCGga---AGGU---AGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 16416 0.7 0.516748
Target:  5'- ----uGCUCGgCUUCCGUCGaucCGGCCg -3'
miRNA:   3'- caguuCGAGCgGAAGGUAGU---GCCGGg -5'
18435 3' -55.7 NC_004681.1 + 53718 0.69 0.569105
Target:  5'- cGUCGuuCUUgGCC-UCCGUCugGGCCUc -3'
miRNA:   3'- -CAGUucGAG-CGGaAGGUAGugCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 26318 0.68 0.64422
Target:  5'- -gCGGGCaUCGCCg-CCGUgGCGGgCCa -3'
miRNA:   3'- caGUUCG-AGCGGaaGGUAgUGCCgGG- -5'
18435 3' -55.7 NC_004681.1 + 12525 0.69 0.569105
Target:  5'- cGUCAc-UUCGCCguccucgUCCGUCAcCGGCUCa -3'
miRNA:   3'- -CAGUucGAGCGGa------AGGUAGU-GCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 47119 0.7 0.547966
Target:  5'- gGUCGGGCUCGUCgguggggaUgGUCAgGGCCUg -3'
miRNA:   3'- -CAGUUCGAGCGGaa------GgUAGUgCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 16727 0.79 0.167738
Target:  5'- -cCGGGCUgaugccCGCCgccUCCAUCGCGGCCUg -3'
miRNA:   3'- caGUUCGA------GCGGa--AGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 23950 0.68 0.622676
Target:  5'- cGUCAGGC-CGCUgaUCCAgCugGGCUg -3'
miRNA:   3'- -CAGUUCGaGCGGa-AGGUaGugCCGGg -5'
18435 3' -55.7 NC_004681.1 + 65202 0.74 0.309816
Target:  5'- uUCAGGg-CGCCUUCCAUCAUugccaGGCCg -3'
miRNA:   3'- cAGUUCgaGCGGAAGGUAGUG-----CCGGg -5'
18435 3' -55.7 NC_004681.1 + 32156 0.7 0.516748
Target:  5'- cUCGAGgaCGCCUUCCuugCGCugcuuGCCCa -3'
miRNA:   3'- cAGUUCgaGCGGAAGGua-GUGc----CGGG- -5'
18435 3' -55.7 NC_004681.1 + 22910 0.68 0.633448
Target:  5'- -gCGGGgUCGCCccggcgaugCCGUaguaGCGGCCCa -3'
miRNA:   3'- caGUUCgAGCGGaa-------GGUAg---UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 62967 0.67 0.687102
Target:  5'- -cCAGGC-CGCUUUguagCgGUCGCGGUCCu -3'
miRNA:   3'- caGUUCGaGCGGAA----GgUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 6921 0.74 0.325082
Target:  5'- uUCAGGCU-GUCg-CCGUCACGGUCCa -3'
miRNA:   3'- cAGUUCGAgCGGaaGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 60676 0.72 0.40868
Target:  5'- cGUCGAGCaccacguUCGUCggCCA--GCGGCCCg -3'
miRNA:   3'- -CAGUUCG-------AGCGGaaGGUagUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.