miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 30818 0.66 0.739485
Target:  5'- cGUCGAGCUCGCC--CCAcaugugggaguUCGCaccgccaccagGGCCg -3'
miRNA:   3'- -CAGUUCGAGCGGaaGGU-----------AGUG-----------CCGGg -5'
18435 3' -55.7 NC_004681.1 + 23950 0.68 0.622676
Target:  5'- cGUCAGGC-CGCUgaUCCAgCugGGCUg -3'
miRNA:   3'- -CAGUUCGaGCGGa-AGGUaGugCCGGg -5'
18435 3' -55.7 NC_004681.1 + 7690 0.66 0.739485
Target:  5'- aGUCGcGggCGUaggugCCAUCACGGCCUc -3'
miRNA:   3'- -CAGUuCgaGCGgaa--GGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 44901 0.66 0.749694
Target:  5'- uGUCGuaGGuCUUGCCcaccUCCAggGCGGUCCa -3'
miRNA:   3'- -CAGU--UC-GAGCGGa---AGGUagUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 19728 0.66 0.753746
Target:  5'- -cCAGGCUUGCCcacccucgCCGUCaucgaccacgccgcaGCGcGCCCa -3'
miRNA:   3'- caGUUCGAGCGGaa------GGUAG---------------UGC-CGGG- -5'
18435 3' -55.7 NC_004681.1 + 40267 0.66 0.779589
Target:  5'- -gCGGGUcuaucucaUCGCCUcgaUCUgcggcGUCGCGGCCUg -3'
miRNA:   3'- caGUUCG--------AGCGGA---AGG-----UAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 10848 0.67 0.718768
Target:  5'- aUgGAGCUUGCCcuugUCCcagugGUCGCGgacGCCCa -3'
miRNA:   3'- cAgUUCGAGCGGa---AGG-----UAGUGC---CGGG- -5'
18435 3' -55.7 NC_004681.1 + 74992 0.66 0.779589
Target:  5'- gGUCAcGGUguaGCCagcggCCGUCACGGUCUc -3'
miRNA:   3'- -CAGU-UCGag-CGGaa---GGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 8629 0.74 0.316618
Target:  5'- -aCGAGCUgaGCCUcgcggaccugauuUCC-UCGCGGCCCg -3'
miRNA:   3'- caGUUCGAg-CGGA-------------AGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 43443 0.73 0.374179
Target:  5'- gGUUGAG-UCGUCauugUCCAUCACGGUCCc -3'
miRNA:   3'- -CAGUUCgAGCGGa---AGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 503 0.72 0.428061
Target:  5'- cGUCAAGCUgGaCCcggCCAUCuuccGCGGCCg -3'
miRNA:   3'- -CAGUUCGAgC-GGaa-GGUAG----UGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 3641 0.71 0.466428
Target:  5'- -gCAGGCcgcccUCGCCUUCgaCGUCGCcGCCCa -3'
miRNA:   3'- caGUUCG-----AGCGGAAG--GUAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 14547 0.69 0.611912
Target:  5'- gGUC-GGCaUCGCCgccaccgCCAcCACGGCCg -3'
miRNA:   3'- -CAGuUCG-AGCGGaa-----GGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 3137 0.68 0.633449
Target:  5'- -cCAgcGGCUCGCCcUCCucCAgGGCCUg -3'
miRNA:   3'- caGU--UCGAGCGGaAGGuaGUgCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 29818 0.68 0.64422
Target:  5'- --gGAGCUCGgCaUCCAaCGCGGCgCg -3'
miRNA:   3'- cagUUCGAGCgGaAGGUaGUGCCGgG- -5'
18435 3' -55.7 NC_004681.1 + 64679 0.68 0.64422
Target:  5'- -cCAAGCUgGgCCUgacauaCAUCGCaGGCCCc -3'
miRNA:   3'- caGUUCGAgC-GGAag----GUAGUG-CCGGG- -5'
18435 3' -55.7 NC_004681.1 + 54998 0.68 0.676432
Target:  5'- -gCAAGCUCggccugaaguGCCUUCagGUCGC-GCCCg -3'
miRNA:   3'- caGUUCGAG----------CGGAAGg-UAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 66897 0.66 0.783482
Target:  5'- cGUCAAGUcuggcgagcuguccaUCGUCgucguugacUCUGUgGCGGCCCu -3'
miRNA:   3'- -CAGUUCG---------------AGCGGa--------AGGUAgUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 22573 0.67 0.687102
Target:  5'- gGUCuGGgUCGCCagCCGcaUCaACGGCCUg -3'
miRNA:   3'- -CAGuUCgAGCGGaaGGU--AG-UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 68901 0.66 0.759788
Target:  5'- aUCGAGg-CGCUgaCCAucgUCACGGCCg -3'
miRNA:   3'- cAGUUCgaGCGGaaGGU---AGUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.