miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 5' -56.9 NC_004681.1 + 37554 0.66 0.711041
Target:  5'- -gGAugUCCUugAaGUccGGGGuCGAGCUg -3'
miRNA:   3'- cgCUugAGGGugUaCA--CCCC-GCUCGA- -5'
18435 5' -56.9 NC_004681.1 + 59793 0.66 0.700597
Target:  5'- cCGcACUCCCAgCAg--GGGGCGuGGCg -3'
miRNA:   3'- cGCuUGAGGGU-GUacaCCCCGC-UCGa -5'
18435 5' -56.9 NC_004681.1 + 1366 0.66 0.679531
Target:  5'- gGCGccCUCCgACAUGUcgGGGGCcacGAGUUc -3'
miRNA:   3'- -CGCuuGAGGgUGUACA--CCCCG---CUCGA- -5'
18435 5' -56.9 NC_004681.1 + 19748 0.67 0.647639
Target:  5'- uGCuGAucGC-CCCGC-UGUGGGGUGAGa- -3'
miRNA:   3'- -CG-CU--UGaGGGUGuACACCCCGCUCga -5'
18435 5' -56.9 NC_004681.1 + 44511 0.67 0.625227
Target:  5'- cGCGcGCgUCCCACAcccUGUGgcgaggaGGGUGAGUUg -3'
miRNA:   3'- -CGCuUG-AGGGUGU---ACAC-------CCCGCUCGA- -5'
18435 5' -56.9 NC_004681.1 + 18210 0.68 0.594335
Target:  5'- gGCGcACcCCCGgGUGUaccGGGCGGGCa -3'
miRNA:   3'- -CGCuUGaGGGUgUACAc--CCCGCUCGa -5'
18435 5' -56.9 NC_004681.1 + 64203 0.68 0.562645
Target:  5'- cGCcAACUucgUCCGCAUGgucUGGGGCGAGg- -3'
miRNA:   3'- -CGcUUGA---GGGUGUAC---ACCCCGCUCga -5'
18435 5' -56.9 NC_004681.1 + 29901 0.7 0.479927
Target:  5'- cCGAGCUCCCGCgccugGUGUGGGaagccauGCaAGCUg -3'
miRNA:   3'- cGCUUGAGGGUG-----UACACCC-------CGcUCGA- -5'
18435 5' -56.9 NC_004681.1 + 16512 0.71 0.423578
Target:  5'- -gGAACUCCCAgAUGgcgGGuGGCG-GCa -3'
miRNA:   3'- cgCUUGAGGGUgUACa--CC-CCGCuCGa -5'
18435 5' -56.9 NC_004681.1 + 30816 0.71 0.414424
Target:  5'- uCGAGCUcgcCCCACAUGUGGGaGUucGCa -3'
miRNA:   3'- cGCUUGA---GGGUGUACACCC-CGcuCGa -5'
18435 5' -56.9 NC_004681.1 + 14799 0.74 0.285661
Target:  5'- gGCGGugUaaCCCACc-GUGGGGCcGAGCUg -3'
miRNA:   3'- -CGCUugA--GGGUGuaCACCCCG-CUCGA- -5'
18435 5' -56.9 NC_004681.1 + 45034 0.79 0.134987
Target:  5'- cGCGGuggcgGCUCcaCCGCGUG-GGGGCGAGCUc -3'
miRNA:   3'- -CGCU-----UGAG--GGUGUACaCCCCGCUCGA- -5'
18435 5' -56.9 NC_004681.1 + 30712 1.09 0.001075
Target:  5'- uGCGAACUCCCACAUGUGGGGCGAGCUc -3'
miRNA:   3'- -CGCUUGAGGGUGUACACCCCGCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.