Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18435 | 5' | -56.9 | NC_004681.1 | + | 37554 | 0.66 | 0.711041 |
Target: 5'- -gGAugUCCUugAaGUccGGGGuCGAGCUg -3' miRNA: 3'- cgCUugAGGGugUaCA--CCCC-GCUCGA- -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 59793 | 0.66 | 0.700597 |
Target: 5'- cCGcACUCCCAgCAg--GGGGCGuGGCg -3' miRNA: 3'- cGCuUGAGGGU-GUacaCCCCGC-UCGa -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 1366 | 0.66 | 0.679531 |
Target: 5'- gGCGccCUCCgACAUGUcgGGGGCcacGAGUUc -3' miRNA: 3'- -CGCuuGAGGgUGUACA--CCCCG---CUCGA- -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 19748 | 0.67 | 0.647639 |
Target: 5'- uGCuGAucGC-CCCGC-UGUGGGGUGAGa- -3' miRNA: 3'- -CG-CU--UGaGGGUGuACACCCCGCUCga -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 44511 | 0.67 | 0.625227 |
Target: 5'- cGCGcGCgUCCCACAcccUGUGgcgaggaGGGUGAGUUg -3' miRNA: 3'- -CGCuUG-AGGGUGU---ACAC-------CCCGCUCGA- -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 18210 | 0.68 | 0.594335 |
Target: 5'- gGCGcACcCCCGgGUGUaccGGGCGGGCa -3' miRNA: 3'- -CGCuUGaGGGUgUACAc--CCCGCUCGa -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 64203 | 0.68 | 0.562645 |
Target: 5'- cGCcAACUucgUCCGCAUGgucUGGGGCGAGg- -3' miRNA: 3'- -CGcUUGA---GGGUGUAC---ACCCCGCUCga -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 29901 | 0.7 | 0.479927 |
Target: 5'- cCGAGCUCCCGCgccugGUGUGGGaagccauGCaAGCUg -3' miRNA: 3'- cGCUUGAGGGUG-----UACACCC-------CGcUCGA- -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 16512 | 0.71 | 0.423578 |
Target: 5'- -gGAACUCCCAgAUGgcgGGuGGCG-GCa -3' miRNA: 3'- cgCUUGAGGGUgUACa--CC-CCGCuCGa -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 30816 | 0.71 | 0.414424 |
Target: 5'- uCGAGCUcgcCCCACAUGUGGGaGUucGCa -3' miRNA: 3'- cGCUUGA---GGGUGUACACCC-CGcuCGa -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 14799 | 0.74 | 0.285661 |
Target: 5'- gGCGGugUaaCCCACc-GUGGGGCcGAGCUg -3' miRNA: 3'- -CGCUugA--GGGUGuaCACCCCG-CUCGA- -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 45034 | 0.79 | 0.134987 |
Target: 5'- cGCGGuggcgGCUCcaCCGCGUG-GGGGCGAGCUc -3' miRNA: 3'- -CGCU-----UGAG--GGUGUACaCCCCGCUCGA- -5' |
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18435 | 5' | -56.9 | NC_004681.1 | + | 30712 | 1.09 | 0.001075 |
Target: 5'- uGCGAACUCCCACAUGUGGGGCGAGCUc -3' miRNA: 3'- -CGCUUGAGGGUGUACACCCCGCUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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