miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18436 3' -59.1 NC_004681.1 + 44263 0.66 0.59902
Target:  5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3'
miRNA:   3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 39040 0.66 0.589555
Target:  5'- uCAGcCGCAGAuGCACggUGGCCGGUu -3'
miRNA:   3'- cGUCuGCGUCUuCGUGggGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 53402 0.66 0.568627
Target:  5'- -aGGACcCGGAAGCGCaCCCAGuuGcGa -3'
miRNA:   3'- cgUCUGcGUCUUCGUG-GGGUCggC-Ca -5'
18436 3' -59.1 NC_004681.1 + 19652 0.66 0.568627
Target:  5'- -gGGACgGCAGcGGCAUCCguaugCAGCUGGUc -3'
miRNA:   3'- cgUCUG-CGUCuUCGUGGG-----GUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 29490 0.67 0.546859
Target:  5'- cGCGGugGUGGAGGCGCUgauguugCCAGacgaGGUg -3'
miRNA:   3'- -CGUCugCGUCUUCGUGG-------GGUCgg--CCA- -5'
18436 3' -59.1 NC_004681.1 + 5277 0.67 0.538634
Target:  5'- gGCGGGCGCGGAcagggucugaccguuAGCcaguagcaucauucACCCUuuggagauagaGGCCGGg -3'
miRNA:   3'- -CGUCUGCGUCU---------------UCG--------------UGGGG-----------UCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 12298 0.67 0.537609
Target:  5'- uGCGGcGCGCGGGGaaGCCCgAcGCCGGg -3'
miRNA:   3'- -CGUC-UGCGUCUUcgUGGGgU-CGGCCa -5'
18436 3' -59.1 NC_004681.1 + 8513 0.67 0.537609
Target:  5'- cGCGGACGguGAGacCGCCCCcgcGGCCa-- -3'
miRNA:   3'- -CGUCUGCguCUUc-GUGGGG---UCGGcca -5'
18436 3' -59.1 NC_004681.1 + 49416 0.67 0.537609
Target:  5'- gGCGGACGguGAGGUugUgCAGaCCGc- -3'
miRNA:   3'- -CGUCUGCguCUUCGugGgGUC-GGCca -5'
18436 3' -59.1 NC_004681.1 + 4844 0.67 0.527396
Target:  5'- cGCAGGCGCuaaagcAGAAGCGCgCCAa-CGGa -3'
miRNA:   3'- -CGUCUGCG------UCUUCGUGgGGUcgGCCa -5'
18436 3' -59.1 NC_004681.1 + 56516 0.67 0.527396
Target:  5'- -aAGugGCuGGAGCGCCUCGucaaccGCUGGg -3'
miRNA:   3'- cgUCugCGuCUUCGUGGGGU------CGGCCa -5'
18436 3' -59.1 NC_004681.1 + 33866 0.67 0.517255
Target:  5'- -gAGACaugguGCGGAAGC-UCCCAGCCGc- -3'
miRNA:   3'- cgUCUG-----CGUCUUCGuGGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 6629 0.67 0.517255
Target:  5'- -gGGugGCuucugcauGAGGCGCCgCGGCuCGGUc -3'
miRNA:   3'- cgUCugCGu-------CUUCGUGGgGUCG-GCCA- -5'
18436 3' -59.1 NC_004681.1 + 41261 0.67 0.497217
Target:  5'- cGCAGGcCGCGGAGGUGCuuggaCUCAGUgGGUc -3'
miRNA:   3'- -CGUCU-GCGUCUUCGUG-----GGGUCGgCCA- -5'
18436 3' -59.1 NC_004681.1 + 62366 0.68 0.487329
Target:  5'- --cGGCGguGAucuuGC-CCCCGGCgCGGUg -3'
miRNA:   3'- cguCUGCguCUu---CGuGGGGUCG-GCCA- -5'
18436 3' -59.1 NC_004681.1 + 30643 0.68 0.487329
Target:  5'- gGUGGugGCaccuucGGAcuGGCGUCCCGGCUGGUa -3'
miRNA:   3'- -CGUCugCG------UCU--UCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 45381 0.68 0.487329
Target:  5'- -aAGGCGgGGGAGCACCUCAaggGCagCGGUg -3'
miRNA:   3'- cgUCUGCgUCUUCGUGGGGU---CG--GCCA- -5'
18436 3' -59.1 NC_004681.1 + 2755 0.68 0.477535
Target:  5'- cGgAGACGUAGGAG-ACCCgGGCUagGGUg -3'
miRNA:   3'- -CgUCUGCGUCUUCgUGGGgUCGG--CCA- -5'
18436 3' -59.1 NC_004681.1 + 43923 0.68 0.477535
Target:  5'- aGCGGACGCu--GGUGCCgUAGCgGGg -3'
miRNA:   3'- -CGUCUGCGucuUCGUGGgGUCGgCCa -5'
18436 3' -59.1 NC_004681.1 + 50307 0.68 0.463989
Target:  5'- gGCcGACGCuGAacucaugGGCACCCCcgaggaaauccgagAGCUGGUc -3'
miRNA:   3'- -CGuCUGCGuCU-------UCGUGGGG--------------UCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.