Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 30643 | 0.68 | 0.487329 |
Target: 5'- gGUGGugGCaccuucGGAcuGGCGUCCCGGCUGGUa -3' miRNA: 3'- -CGUCugCG------UCU--UCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 43923 | 0.68 | 0.477535 |
Target: 5'- aGCGGACGCu--GGUGCCgUAGCgGGg -3' miRNA: 3'- -CGUCUGCGucuUCGUGGgGUCGgCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 2755 | 0.68 | 0.477535 |
Target: 5'- cGgAGACGUAGGAG-ACCCgGGCUagGGUg -3' miRNA: 3'- -CgUCUGCGUCUUCgUGGGgUCGG--CCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 7234 | 0.68 | 0.458246 |
Target: 5'- -uGGACuGCAGGAucaccGCAUCCCGGuuGGa -3' miRNA: 3'- cgUCUG-CGUCUU-----CGUGGGGUCggCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 14778 | 0.68 | 0.445933 |
Target: 5'- cGCGGACGCccuggccauccugaAGGcuGGCGCCC-AGCUGGc -3' miRNA: 3'- -CGUCUGCG--------------UCU--UCGUGGGgUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 60615 | 0.68 | 0.448758 |
Target: 5'- gGCAcuuGACgaGCAGAgcGGCACCCUcaAGUCGGg -3' miRNA: 3'- -CGU---CUG--CGUCU--UCGUGGGG--UCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 50307 | 0.68 | 0.463989 |
Target: 5'- gGCcGACGCuGAacucaugGGCACCCCcgaggaaauccgagAGCUGGUc -3' miRNA: 3'- -CGuCUGCGuCU-------UCGUGGGG--------------UCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 45381 | 0.68 | 0.487329 |
Target: 5'- -aAGGCGgGGGAGCACCUCAaggGCagCGGUg -3' miRNA: 3'- cgUCUGCgUCUUCGUGGGGU---CG--GCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 5277 | 0.67 | 0.538634 |
Target: 5'- gGCGGGCGCGGAcagggucugaccguuAGCcaguagcaucauucACCCUuuggagauagaGGCCGGg -3' miRNA: 3'- -CGUCUGCGUCU---------------UCG--------------UGGGG-----------UCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 12298 | 0.67 | 0.537609 |
Target: 5'- uGCGGcGCGCGGGGaaGCCCgAcGCCGGg -3' miRNA: 3'- -CGUC-UGCGUCUUcgUGGGgU-CGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 49416 | 0.67 | 0.537609 |
Target: 5'- gGCGGACGguGAGGUugUgCAGaCCGc- -3' miRNA: 3'- -CGUCUGCguCUUCGugGgGUC-GGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 4844 | 0.67 | 0.527396 |
Target: 5'- cGCAGGCGCuaaagcAGAAGCGCgCCAa-CGGa -3' miRNA: 3'- -CGUCUGCG------UCUUCGUGgGGUcgGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 33866 | 0.67 | 0.517255 |
Target: 5'- -gAGACaugguGCGGAAGC-UCCCAGCCGc- -3' miRNA: 3'- cgUCUG-----CGUCUUCGuGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 6629 | 0.67 | 0.517255 |
Target: 5'- -gGGugGCuucugcauGAGGCGCCgCGGCuCGGUc -3' miRNA: 3'- cgUCugCGu-------CUUCGUGGgGUCG-GCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 41261 | 0.67 | 0.497217 |
Target: 5'- cGCAGGcCGCGGAGGUGCuuggaCUCAGUgGGUc -3' miRNA: 3'- -CGUCU-GCGUCUUCGUG-----GGGUCGgCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 56516 | 0.67 | 0.527396 |
Target: 5'- -aAGugGCuGGAGCGCCUCGucaaccGCUGGg -3' miRNA: 3'- cgUCugCGuCUUCGUGGGGU------CGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 8513 | 0.67 | 0.537609 |
Target: 5'- cGCGGACGguGAGacCGCCCCcgcGGCCa-- -3' miRNA: 3'- -CGUCUGCguCUUc-GUGGGG---UCGGcca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 29490 | 0.67 | 0.546859 |
Target: 5'- cGCGGugGUGGAGGCGCUgauguugCCAGacgaGGUg -3' miRNA: 3'- -CGUCugCGUCUUCGUGG-------GGUCgg--CCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 53402 | 0.66 | 0.568627 |
Target: 5'- -aGGACcCGGAAGCGCaCCCAGuuGcGa -3' miRNA: 3'- cgUCUGcGUCUUCGUG-GGGUCggC-Ca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 44263 | 0.66 | 0.59902 |
Target: 5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3' miRNA: 3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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