Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 31574 | 1.08 | 0.000657 |
Target: 5'- aGCAGACGCAGAAGCACCCCAGCCGGUc -3' miRNA: 3'- -CGUCUGCGUCUUCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 74652 | 0.8 | 0.083205 |
Target: 5'- aCAGAgcuCaCAGAGGCACUCCAGCCGGUa -3' miRNA: 3'- cGUCU---GcGUCUUCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 74844 | 0.79 | 0.090347 |
Target: 5'- uGguGAgGCGGAGGaCACCCgCGGCCGGa -3' miRNA: 3'- -CguCUgCGUCUUC-GUGGG-GUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 9338 | 0.75 | 0.167537 |
Target: 5'- uCAGGCGCAGGAGC-UCCCAGUCGc- -3' miRNA: 3'- cGUCUGCGUCUUCGuGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 53621 | 0.74 | 0.200859 |
Target: 5'- cCAGACGgAGGccaagaacgacGGCGCCCUGGUCGGUg -3' miRNA: 3'- cGUCUGCgUCU-----------UCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 16141 | 0.73 | 0.227494 |
Target: 5'- gGCGGAUGCGGugacagcggcGGCGCCCuugccagCAGCCGGg -3' miRNA: 3'- -CGUCUGCGUCu---------UCGUGGG-------GUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 7687 | 0.72 | 0.252026 |
Target: 5'- cGCGGGCGUAGGugccaucacGGCcuCCCCGGCCGu- -3' miRNA: 3'- -CGUCUGCGUCU---------UCGu-GGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 22392 | 0.72 | 0.252026 |
Target: 5'- aGUGGACGCu--GGuCACCCCGGCCGcGg -3' miRNA: 3'- -CGUCUGCGucuUC-GUGGGGUCGGC-Ca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 73159 | 0.72 | 0.264764 |
Target: 5'- cGgAGAcCGCAGuacuGGCACUCCAGCCGc- -3' miRNA: 3'- -CgUCU-GCGUCu---UCGUGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 5825 | 0.71 | 0.298883 |
Target: 5'- uGCGGcACG-AGAAGCGCCUCAGCCc-- -3' miRNA: 3'- -CGUC-UGCgUCUUCGUGGGGUCGGcca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 29012 | 0.71 | 0.327791 |
Target: 5'- uGCAgGugGUuucaucagguaggGGGAGCGCCUCAGUCGGc -3' miRNA: 3'- -CGU-CugCG-------------UCUUCGUGGGGUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 2640 | 0.71 | 0.328559 |
Target: 5'- --cGcCGCGGAcGGCACCCUAGcCCGGg -3' miRNA: 3'- cguCuGCGUCU-UCGUGGGGUC-GGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 55673 | 0.7 | 0.335529 |
Target: 5'- aGUAGAUuccgaugGCaaagAGAAG-GCCCCAGCCGGUg -3' miRNA: 3'- -CGUCUG-------CG----UCUUCgUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 49545 | 0.7 | 0.336309 |
Target: 5'- aGCGGGggcCGUGGAAGCACU--GGCCGGUg -3' miRNA: 3'- -CGUCU---GCGUCUUCGUGGggUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 16279 | 0.7 | 0.341814 |
Target: 5'- cCAGGCGCAGGgcuaccAGCuCCCCgagggcauccccgcGGCCGGa -3' miRNA: 3'- cGUCUGCGUCU------UCGuGGGG--------------UCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 33988 | 0.69 | 0.385576 |
Target: 5'- uGguGccuuCGCAGGgcuuGCACCCCGGCUuGGUg -3' miRNA: 3'- -CguCu---GCGUCUu---CGUGGGGUCGG-CCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 25010 | 0.69 | 0.394238 |
Target: 5'- cGCAGAagGguGGcAGCugCCCAcuuGCCGGg -3' miRNA: 3'- -CGUCUg-CguCU-UCGugGGGU---CGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 68517 | 0.69 | 0.420965 |
Target: 5'- cGCGGcACGCcuGGGCGCCau-GCCGGUg -3' miRNA: 3'- -CGUC-UGCGucUUCGUGGgguCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 17953 | 0.69 | 0.430115 |
Target: 5'- cCAGAgugaaCGCcGggGCGCCCgGGuuGGUg -3' miRNA: 3'- cGUCU-----GCGuCuuCGUGGGgUCggCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 14778 | 0.68 | 0.445933 |
Target: 5'- cGCGGACGCccuggccauccugaAGGcuGGCGCCC-AGCUGGc -3' miRNA: 3'- -CGUCUGCG--------------UCU--UCGUGGGgUCGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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