miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18436 3' -59.1 NC_004681.1 + 7234 0.68 0.458246
Target:  5'- -uGGACuGCAGGAucaccGCAUCCCGGuuGGa -3'
miRNA:   3'- cgUCUG-CGUCUU-----CGUGGGGUCggCCa -5'
18436 3' -59.1 NC_004681.1 + 60615 0.68 0.448758
Target:  5'- gGCAcuuGACgaGCAGAgcGGCACCCUcaAGUCGGg -3'
miRNA:   3'- -CGU---CUG--CGUCU--UCGUGGGG--UCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 14778 0.68 0.445933
Target:  5'- cGCGGACGCccuggccauccugaAGGcuGGCGCCC-AGCUGGc -3'
miRNA:   3'- -CGUCUGCG--------------UCU--UCGUGGGgUCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 17953 0.69 0.430115
Target:  5'- cCAGAgugaaCGCcGggGCGCCCgGGuuGGUg -3'
miRNA:   3'- cGUCU-----GCGuCuuCGUGGGgUCggCCA- -5'
18436 3' -59.1 NC_004681.1 + 68517 0.69 0.420965
Target:  5'- cGCGGcACGCcuGGGCGCCau-GCCGGUg -3'
miRNA:   3'- -CGUC-UGCGucUUCGUGGgguCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 25010 0.69 0.394238
Target:  5'- cGCAGAagGguGGcAGCugCCCAcuuGCCGGg -3'
miRNA:   3'- -CGUCUg-CguCU-UCGugGGGU---CGGCCa -5'
18436 3' -59.1 NC_004681.1 + 33988 0.69 0.385576
Target:  5'- uGguGccuuCGCAGGgcuuGCACCCCGGCUuGGUg -3'
miRNA:   3'- -CguCu---GCGUCUu---CGUGGGGUCGG-CCA- -5'
18436 3' -59.1 NC_004681.1 + 16279 0.7 0.341814
Target:  5'- cCAGGCGCAGGgcuaccAGCuCCCCgagggcauccccgcGGCCGGa -3'
miRNA:   3'- cGUCUGCGUCU------UCGuGGGG--------------UCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 49545 0.7 0.336309
Target:  5'- aGCGGGggcCGUGGAAGCACU--GGCCGGUg -3'
miRNA:   3'- -CGUCU---GCGUCUUCGUGGggUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 55673 0.7 0.335529
Target:  5'- aGUAGAUuccgaugGCaaagAGAAG-GCCCCAGCCGGUg -3'
miRNA:   3'- -CGUCUG-------CG----UCUUCgUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 2640 0.71 0.328559
Target:  5'- --cGcCGCGGAcGGCACCCUAGcCCGGg -3'
miRNA:   3'- cguCuGCGUCU-UCGUGGGGUC-GGCCa -5'
18436 3' -59.1 NC_004681.1 + 29012 0.71 0.327791
Target:  5'- uGCAgGugGUuucaucagguaggGGGAGCGCCUCAGUCGGc -3'
miRNA:   3'- -CGU-CugCG-------------UCUUCGUGGGGUCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 5825 0.71 0.298883
Target:  5'- uGCGGcACG-AGAAGCGCCUCAGCCc-- -3'
miRNA:   3'- -CGUC-UGCgUCUUCGUGGGGUCGGcca -5'
18436 3' -59.1 NC_004681.1 + 73159 0.72 0.264764
Target:  5'- cGgAGAcCGCAGuacuGGCACUCCAGCCGc- -3'
miRNA:   3'- -CgUCU-GCGUCu---UCGUGGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 7687 0.72 0.252026
Target:  5'- cGCGGGCGUAGGugccaucacGGCcuCCCCGGCCGu- -3'
miRNA:   3'- -CGUCUGCGUCU---------UCGu-GGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 22392 0.72 0.252026
Target:  5'- aGUGGACGCu--GGuCACCCCGGCCGcGg -3'
miRNA:   3'- -CGUCUGCGucuUC-GUGGGGUCGGC-Ca -5'
18436 3' -59.1 NC_004681.1 + 16141 0.73 0.227494
Target:  5'- gGCGGAUGCGGugacagcggcGGCGCCCuugccagCAGCCGGg -3'
miRNA:   3'- -CGUCUGCGUCu---------UCGUGGG-------GUCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 53621 0.74 0.200859
Target:  5'- cCAGACGgAGGccaagaacgacGGCGCCCUGGUCGGUg -3'
miRNA:   3'- cGUCUGCgUCU-----------UCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 9338 0.75 0.167537
Target:  5'- uCAGGCGCAGGAGC-UCCCAGUCGc- -3'
miRNA:   3'- cGUCUGCGUCUUCGuGGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 74844 0.79 0.090347
Target:  5'- uGguGAgGCGGAGGaCACCCgCGGCCGGa -3'
miRNA:   3'- -CguCUgCGUCUUC-GUGGG-GUCGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.