miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18436 3' -59.1 NC_004681.1 + 30643 0.68 0.487329
Target:  5'- gGUGGugGCaccuucGGAcuGGCGUCCCGGCUGGUa -3'
miRNA:   3'- -CGUCugCG------UCU--UCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 31574 1.08 0.000657
Target:  5'- aGCAGACGCAGAAGCACCCCAGCCGGUc -3'
miRNA:   3'- -CGUCUGCGUCUUCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 33866 0.67 0.517255
Target:  5'- -gAGACaugguGCGGAAGC-UCCCAGCCGc- -3'
miRNA:   3'- cgUCUG-----CGUCUUCGuGGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 33988 0.69 0.385576
Target:  5'- uGguGccuuCGCAGGgcuuGCACCCCGGCUuGGUg -3'
miRNA:   3'- -CguCu---GCGUCUu---CGUGGGGUCGG-CCA- -5'
18436 3' -59.1 NC_004681.1 + 39040 0.66 0.589555
Target:  5'- uCAGcCGCAGAuGCACggUGGCCGGUu -3'
miRNA:   3'- cGUCuGCGUCUuCGUGggGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 41261 0.67 0.497217
Target:  5'- cGCAGGcCGCGGAGGUGCuuggaCUCAGUgGGUc -3'
miRNA:   3'- -CGUCU-GCGUCUUCGUG-----GGGUCGgCCA- -5'
18436 3' -59.1 NC_004681.1 + 43923 0.68 0.477535
Target:  5'- aGCGGACGCu--GGUGCCgUAGCgGGg -3'
miRNA:   3'- -CGUCUGCGucuUCGUGGgGUCGgCCa -5'
18436 3' -59.1 NC_004681.1 + 44263 0.66 0.59902
Target:  5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3'
miRNA:   3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 45381 0.68 0.487329
Target:  5'- -aAGGCGgGGGAGCACCUCAaggGCagCGGUg -3'
miRNA:   3'- cgUCUGCgUCUUCGUGGGGU---CG--GCCA- -5'
18436 3' -59.1 NC_004681.1 + 49416 0.67 0.537609
Target:  5'- gGCGGACGguGAGGUugUgCAGaCCGc- -3'
miRNA:   3'- -CGUCUGCguCUUCGugGgGUC-GGCca -5'
18436 3' -59.1 NC_004681.1 + 49545 0.7 0.336309
Target:  5'- aGCGGGggcCGUGGAAGCACU--GGCCGGUg -3'
miRNA:   3'- -CGUCU---GCGUCUUCGUGGggUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 50307 0.68 0.463989
Target:  5'- gGCcGACGCuGAacucaugGGCACCCCcgaggaaauccgagAGCUGGUc -3'
miRNA:   3'- -CGuCUGCGuCU-------UCGUGGGG--------------UCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 53402 0.66 0.568627
Target:  5'- -aGGACcCGGAAGCGCaCCCAGuuGcGa -3'
miRNA:   3'- cgUCUGcGUCUUCGUG-GGGUCggC-Ca -5'
18436 3' -59.1 NC_004681.1 + 53621 0.74 0.200859
Target:  5'- cCAGACGgAGGccaagaacgacGGCGCCCUGGUCGGUg -3'
miRNA:   3'- cGUCUGCgUCU-----------UCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 55673 0.7 0.335529
Target:  5'- aGUAGAUuccgaugGCaaagAGAAG-GCCCCAGCCGGUg -3'
miRNA:   3'- -CGUCUG-------CG----UCUUCgUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 56516 0.67 0.527396
Target:  5'- -aAGugGCuGGAGCGCCUCGucaaccGCUGGg -3'
miRNA:   3'- cgUCugCGuCUUCGUGGGGU------CGGCCa -5'
18436 3' -59.1 NC_004681.1 + 60615 0.68 0.448758
Target:  5'- gGCAcuuGACgaGCAGAgcGGCACCCUcaAGUCGGg -3'
miRNA:   3'- -CGU---CUG--CGUCU--UCGUGGGG--UCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 62366 0.68 0.487329
Target:  5'- --cGGCGguGAucuuGC-CCCCGGCgCGGUg -3'
miRNA:   3'- cguCUGCguCUu---CGuGGGGUCG-GCCA- -5'
18436 3' -59.1 NC_004681.1 + 68517 0.69 0.420965
Target:  5'- cGCGGcACGCcuGGGCGCCau-GCCGGUg -3'
miRNA:   3'- -CGUC-UGCGucUUCGUGGgguCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 73159 0.72 0.264764
Target:  5'- cGgAGAcCGCAGuacuGGCACUCCAGCCGc- -3'
miRNA:   3'- -CgUCU-GCGUCu---UCGUGGGGUCGGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.