Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 74844 | 0.79 | 0.090347 |
Target: 5'- uGguGAgGCGGAGGaCACCCgCGGCCGGa -3' miRNA: 3'- -CguCUgCGUCUUC-GUGGG-GUCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 74652 | 0.8 | 0.083205 |
Target: 5'- aCAGAgcuCaCAGAGGCACUCCAGCCGGUa -3' miRNA: 3'- cGUCU---GcGUCUUCGUGGGGUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 73159 | 0.72 | 0.264764 |
Target: 5'- cGgAGAcCGCAGuacuGGCACUCCAGCCGc- -3' miRNA: 3'- -CgUCU-GCGUCu---UCGUGGGGUCGGCca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 68517 | 0.69 | 0.420965 |
Target: 5'- cGCGGcACGCcuGGGCGCCau-GCCGGUg -3' miRNA: 3'- -CGUC-UGCGucUUCGUGGgguCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 62366 | 0.68 | 0.487329 |
Target: 5'- --cGGCGguGAucuuGC-CCCCGGCgCGGUg -3' miRNA: 3'- cguCUGCguCUu---CGuGGGGUCG-GCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 60615 | 0.68 | 0.448758 |
Target: 5'- gGCAcuuGACgaGCAGAgcGGCACCCUcaAGUCGGg -3' miRNA: 3'- -CGU---CUG--CGUCU--UCGUGGGG--UCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 56516 | 0.67 | 0.527396 |
Target: 5'- -aAGugGCuGGAGCGCCUCGucaaccGCUGGg -3' miRNA: 3'- cgUCugCGuCUUCGUGGGGU------CGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 55673 | 0.7 | 0.335529 |
Target: 5'- aGUAGAUuccgaugGCaaagAGAAG-GCCCCAGCCGGUg -3' miRNA: 3'- -CGUCUG-------CG----UCUUCgUGGGGUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 53621 | 0.74 | 0.200859 |
Target: 5'- cCAGACGgAGGccaagaacgacGGCGCCCUGGUCGGUg -3' miRNA: 3'- cGUCUGCgUCU-----------UCGUGGGGUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 53402 | 0.66 | 0.568627 |
Target: 5'- -aGGACcCGGAAGCGCaCCCAGuuGcGa -3' miRNA: 3'- cgUCUGcGUCUUCGUG-GGGUCggC-Ca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 50307 | 0.68 | 0.463989 |
Target: 5'- gGCcGACGCuGAacucaugGGCACCCCcgaggaaauccgagAGCUGGUc -3' miRNA: 3'- -CGuCUGCGuCU-------UCGUGGGG--------------UCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 49545 | 0.7 | 0.336309 |
Target: 5'- aGCGGGggcCGUGGAAGCACU--GGCCGGUg -3' miRNA: 3'- -CGUCU---GCGUCUUCGUGGggUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 49416 | 0.67 | 0.537609 |
Target: 5'- gGCGGACGguGAGGUugUgCAGaCCGc- -3' miRNA: 3'- -CGUCUGCguCUUCGugGgGUC-GGCca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 45381 | 0.68 | 0.487329 |
Target: 5'- -aAGGCGgGGGAGCACCUCAaggGCagCGGUg -3' miRNA: 3'- cgUCUGCgUCUUCGUGGGGU---CG--GCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 44263 | 0.66 | 0.59902 |
Target: 5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3' miRNA: 3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 43923 | 0.68 | 0.477535 |
Target: 5'- aGCGGACGCu--GGUGCCgUAGCgGGg -3' miRNA: 3'- -CGUCUGCGucuUCGUGGgGUCGgCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 41261 | 0.67 | 0.497217 |
Target: 5'- cGCAGGcCGCGGAGGUGCuuggaCUCAGUgGGUc -3' miRNA: 3'- -CGUCU-GCGUCUUCGUG-----GGGUCGgCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 39040 | 0.66 | 0.589555 |
Target: 5'- uCAGcCGCAGAuGCACggUGGCCGGUu -3' miRNA: 3'- cGUCuGCGUCUuCGUGggGUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 33988 | 0.69 | 0.385576 |
Target: 5'- uGguGccuuCGCAGGgcuuGCACCCCGGCUuGGUg -3' miRNA: 3'- -CguCu---GCGUCUu---CGUGGGGUCGG-CCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 33866 | 0.67 | 0.517255 |
Target: 5'- -gAGACaugguGCGGAAGC-UCCCAGCCGc- -3' miRNA: 3'- cgUCUG-----CGUCUUCGuGGGGUCGGCca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home