Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 31574 | 1.08 | 0.000657 |
Target: 5'- aGCAGACGCAGAAGCACCCCAGCCGGUc -3' miRNA: 3'- -CGUCUGCGUCUUCGUGGGGUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 30643 | 0.68 | 0.487329 |
Target: 5'- gGUGGugGCaccuucGGAcuGGCGUCCCGGCUGGUa -3' miRNA: 3'- -CGUCugCG------UCU--UCGUGGGGUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 29490 | 0.67 | 0.546859 |
Target: 5'- cGCGGugGUGGAGGCGCUgauguugCCAGacgaGGUg -3' miRNA: 3'- -CGUCugCGUCUUCGUGG-------GGUCgg--CCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 29012 | 0.71 | 0.327791 |
Target: 5'- uGCAgGugGUuucaucagguaggGGGAGCGCCUCAGUCGGc -3' miRNA: 3'- -CGU-CugCG-------------UCUUCGUGGGGUCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 25010 | 0.69 | 0.394238 |
Target: 5'- cGCAGAagGguGGcAGCugCCCAcuuGCCGGg -3' miRNA: 3'- -CGUCUg-CguCU-UCGugGGGU---CGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 22392 | 0.72 | 0.252026 |
Target: 5'- aGUGGACGCu--GGuCACCCCGGCCGcGg -3' miRNA: 3'- -CGUCUGCGucuUC-GUGGGGUCGGC-Ca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 19652 | 0.66 | 0.568627 |
Target: 5'- -gGGACgGCAGcGGCAUCCguaugCAGCUGGUc -3' miRNA: 3'- cgUCUG-CGUCuUCGUGGG-----GUCGGCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 17953 | 0.69 | 0.430115 |
Target: 5'- cCAGAgugaaCGCcGggGCGCCCgGGuuGGUg -3' miRNA: 3'- cGUCU-----GCGuCuuCGUGGGgUCggCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 16279 | 0.7 | 0.341814 |
Target: 5'- cCAGGCGCAGGgcuaccAGCuCCCCgagggcauccccgcGGCCGGa -3' miRNA: 3'- cGUCUGCGUCU------UCGuGGGG--------------UCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 16141 | 0.73 | 0.227494 |
Target: 5'- gGCGGAUGCGGugacagcggcGGCGCCCuugccagCAGCCGGg -3' miRNA: 3'- -CGUCUGCGUCu---------UCGUGGG-------GUCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 14778 | 0.68 | 0.445933 |
Target: 5'- cGCGGACGCccuggccauccugaAGGcuGGCGCCC-AGCUGGc -3' miRNA: 3'- -CGUCUGCG--------------UCU--UCGUGGGgUCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 12298 | 0.67 | 0.537609 |
Target: 5'- uGCGGcGCGCGGGGaaGCCCgAcGCCGGg -3' miRNA: 3'- -CGUC-UGCGUCUUcgUGGGgU-CGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 9338 | 0.75 | 0.167537 |
Target: 5'- uCAGGCGCAGGAGC-UCCCAGUCGc- -3' miRNA: 3'- cGUCUGCGUCUUCGuGGGGUCGGCca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 8513 | 0.67 | 0.537609 |
Target: 5'- cGCGGACGguGAGacCGCCCCcgcGGCCa-- -3' miRNA: 3'- -CGUCUGCguCUUc-GUGGGG---UCGGcca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 7687 | 0.72 | 0.252026 |
Target: 5'- cGCGGGCGUAGGugccaucacGGCcuCCCCGGCCGu- -3' miRNA: 3'- -CGUCUGCGUCU---------UCGu-GGGGUCGGCca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 7234 | 0.68 | 0.458246 |
Target: 5'- -uGGACuGCAGGAucaccGCAUCCCGGuuGGa -3' miRNA: 3'- cgUCUG-CGUCUU-----CGUGGGGUCggCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 6629 | 0.67 | 0.517255 |
Target: 5'- -gGGugGCuucugcauGAGGCGCCgCGGCuCGGUc -3' miRNA: 3'- cgUCugCGu-------CUUCGUGGgGUCG-GCCA- -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 5825 | 0.71 | 0.298883 |
Target: 5'- uGCGGcACG-AGAAGCGCCUCAGCCc-- -3' miRNA: 3'- -CGUC-UGCgUCUUCGUGGGGUCGGcca -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 5277 | 0.67 | 0.538634 |
Target: 5'- gGCGGGCGCGGAcagggucugaccguuAGCcaguagcaucauucACCCUuuggagauagaGGCCGGg -3' miRNA: 3'- -CGUCUGCGUCU---------------UCG--------------UGGGG-----------UCGGCCa -5' |
|||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 4844 | 0.67 | 0.527396 |
Target: 5'- cGCAGGCGCuaaagcAGAAGCGCgCCAa-CGGa -3' miRNA: 3'- -CGUCUGCG------UCUUCGUGgGGUcgGCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home