miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18436 3' -59.1 NC_004681.1 + 31574 1.08 0.000657
Target:  5'- aGCAGACGCAGAAGCACCCCAGCCGGUc -3'
miRNA:   3'- -CGUCUGCGUCUUCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 19652 0.66 0.568627
Target:  5'- -gGGACgGCAGcGGCAUCCguaugCAGCUGGUc -3'
miRNA:   3'- cgUCUG-CGUCuUCGUGGG-----GUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 8513 0.67 0.537609
Target:  5'- cGCGGACGguGAGacCGCCCCcgcGGCCa-- -3'
miRNA:   3'- -CGUCUGCguCUUc-GUGGGG---UCGGcca -5'
18436 3' -59.1 NC_004681.1 + 56516 0.67 0.527396
Target:  5'- -aAGugGCuGGAGCGCCUCGucaaccGCUGGg -3'
miRNA:   3'- cgUCugCGuCUUCGUGGGGU------CGGCCa -5'
18436 3' -59.1 NC_004681.1 + 45381 0.68 0.487329
Target:  5'- -aAGGCGgGGGAGCACCUCAaggGCagCGGUg -3'
miRNA:   3'- cgUCUGCgUCUUCGUGGGGU---CG--GCCA- -5'
18436 3' -59.1 NC_004681.1 + 50307 0.68 0.463989
Target:  5'- gGCcGACGCuGAacucaugGGCACCCCcgaggaaauccgagAGCUGGUc -3'
miRNA:   3'- -CGuCUGCGuCU-------UCGUGGGG--------------UCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 60615 0.68 0.448758
Target:  5'- gGCAcuuGACgaGCAGAgcGGCACCCUcaAGUCGGg -3'
miRNA:   3'- -CGU---CUG--CGUCU--UCGUGGGG--UCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 14778 0.68 0.445933
Target:  5'- cGCGGACGCccuggccauccugaAGGcuGGCGCCC-AGCUGGc -3'
miRNA:   3'- -CGUCUGCG--------------UCU--UCGUGGGgUCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 68517 0.69 0.420965
Target:  5'- cGCGGcACGCcuGGGCGCCau-GCCGGUg -3'
miRNA:   3'- -CGUC-UGCGucUUCGUGGgguCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 16279 0.7 0.341814
Target:  5'- cCAGGCGCAGGgcuaccAGCuCCCCgagggcauccccgcGGCCGGa -3'
miRNA:   3'- cGUCUGCGUCU------UCGuGGGG--------------UCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 74652 0.8 0.083205
Target:  5'- aCAGAgcuCaCAGAGGCACUCCAGCCGGUa -3'
miRNA:   3'- cGUCU---GcGUCUUCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 53621 0.74 0.200859
Target:  5'- cCAGACGgAGGccaagaacgacGGCGCCCUGGUCGGUg -3'
miRNA:   3'- cGUCUGCgUCU-----------UCGUGGGGUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 22392 0.72 0.252026
Target:  5'- aGUGGACGCu--GGuCACCCCGGCCGcGg -3'
miRNA:   3'- -CGUCUGCGucuUC-GUGGGGUCGGC-Ca -5'
18436 3' -59.1 NC_004681.1 + 73159 0.72 0.264764
Target:  5'- cGgAGAcCGCAGuacuGGCACUCCAGCCGc- -3'
miRNA:   3'- -CgUCU-GCGUCu---UCGUGGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 5825 0.71 0.298883
Target:  5'- uGCGGcACG-AGAAGCGCCUCAGCCc-- -3'
miRNA:   3'- -CGUC-UGCgUCUUCGUGGGGUCGGcca -5'
18436 3' -59.1 NC_004681.1 + 29012 0.71 0.327791
Target:  5'- uGCAgGugGUuucaucagguaggGGGAGCGCCUCAGUCGGc -3'
miRNA:   3'- -CGU-CugCG-------------UCUUCGUGGGGUCGGCCa -5'
18436 3' -59.1 NC_004681.1 + 2640 0.71 0.328559
Target:  5'- --cGcCGCGGAcGGCACCCUAGcCCGGg -3'
miRNA:   3'- cguCuGCGUCU-UCGUGGGGUC-GGCCa -5'
18436 3' -59.1 NC_004681.1 + 44263 0.66 0.59902
Target:  5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3'
miRNA:   3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5'
18436 3' -59.1 NC_004681.1 + 9338 0.75 0.167537
Target:  5'- uCAGGCGCAGGAGC-UCCCAGUCGc- -3'
miRNA:   3'- cGUCUGCGUCUUCGuGGGGUCGGCca -5'
18436 3' -59.1 NC_004681.1 + 16141 0.73 0.227494
Target:  5'- gGCGGAUGCGGugacagcggcGGCGCCCuugccagCAGCCGGg -3'
miRNA:   3'- -CGUCUGCGUCu---------UCGUGGG-------GUCGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.