Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 55673 | 0.7 | 0.335529 |
Target: 5'- aGUAGAUuccgaugGCaaagAGAAG-GCCCCAGCCGGUg -3' miRNA: 3'- -CGUCUG-------CG----UCUUCgUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 4844 | 0.67 | 0.527396 |
Target: 5'- cGCAGGCGCuaaagcAGAAGCGCgCCAa-CGGa -3' miRNA: 3'- -CGUCUGCG------UCUUCGUGgGGUcgGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 12298 | 0.67 | 0.537609 |
Target: 5'- uGCGGcGCGCGGGGaaGCCCgAcGCCGGg -3' miRNA: 3'- -CGUC-UGCGUCUUcgUGGGgU-CGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 44263 | 0.66 | 0.59902 |
Target: 5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3' miRNA: 3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 17953 | 0.69 | 0.430115 |
Target: 5'- cCAGAgugaaCGCcGggGCGCCCgGGuuGGUg -3' miRNA: 3'- cGUCU-----GCGuCuuCGUGGGgUCggCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 7234 | 0.68 | 0.458246 |
Target: 5'- -uGGACuGCAGGAucaccGCAUCCCGGuuGGa -3' miRNA: 3'- cgUCUG-CGUCUU-----CGUGGGGUCggCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 74844 | 0.79 | 0.090347 |
Target: 5'- uGguGAgGCGGAGGaCACCCgCGGCCGGa -3' miRNA: 3'- -CguCUgCGUCUUC-GUGGG-GUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 9338 | 0.75 | 0.167537 |
Target: 5'- uCAGGCGCAGGAGC-UCCCAGUCGc- -3' miRNA: 3'- cGUCUGCGUCUUCGuGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 16141 | 0.73 | 0.227494 |
Target: 5'- gGCGGAUGCGGugacagcggcGGCGCCCuugccagCAGCCGGg -3' miRNA: 3'- -CGUCUGCGUCu---------UCGUGGG-------GUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 33866 | 0.67 | 0.517255 |
Target: 5'- -gAGACaugguGCGGAAGC-UCCCAGCCGc- -3' miRNA: 3'- cgUCUG-----CGUCUUCGuGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 30643 | 0.68 | 0.487329 |
Target: 5'- gGUGGugGCaccuucGGAcuGGCGUCCCGGCUGGUa -3' miRNA: 3'- -CGUCugCG------UCU--UCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 62366 | 0.68 | 0.487329 |
Target: 5'- --cGGCGguGAucuuGC-CCCCGGCgCGGUg -3' miRNA: 3'- cguCUGCguCUu---CGuGGGGUCG-GCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 49545 | 0.7 | 0.336309 |
Target: 5'- aGCGGGggcCGUGGAAGCACU--GGCCGGUg -3' miRNA: 3'- -CGUCU---GCGUCUUCGUGGggUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 41261 | 0.67 | 0.497217 |
Target: 5'- cGCAGGcCGCGGAGGUGCuuggaCUCAGUgGGUc -3' miRNA: 3'- -CGUCU-GCGUCUUCGUG-----GGGUCGgCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 33988 | 0.69 | 0.385576 |
Target: 5'- uGguGccuuCGCAGGgcuuGCACCCCGGCUuGGUg -3' miRNA: 3'- -CguCu---GCGUCUu---CGUGGGGUCGG-CCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 43923 | 0.68 | 0.477535 |
Target: 5'- aGCGGACGCu--GGUGCCgUAGCgGGg -3' miRNA: 3'- -CGUCUGCGucuUCGUGGgGUCGgCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 6629 | 0.67 | 0.517255 |
Target: 5'- -gGGugGCuucugcauGAGGCGCCgCGGCuCGGUc -3' miRNA: 3'- cgUCugCGu-------CUUCGUGGgGUCG-GCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 49416 | 0.67 | 0.537609 |
Target: 5'- gGCGGACGguGAGGUugUgCAGaCCGc- -3' miRNA: 3'- -CGUCUGCguCUUCGugGgGUC-GGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 25010 | 0.69 | 0.394238 |
Target: 5'- cGCAGAagGguGGcAGCugCCCAcuuGCCGGg -3' miRNA: 3'- -CGUCUg-CguCU-UCGugGGGU---CGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 2755 | 0.68 | 0.477535 |
Target: 5'- cGgAGACGUAGGAG-ACCCgGGCUagGGUg -3' miRNA: 3'- -CgUCUGCGUCUUCgUGGGgUCGG--CCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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