Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18436 | 3' | -59.1 | NC_004681.1 | + | 9338 | 0.75 | 0.167537 |
Target: 5'- uCAGGCGCAGGAGC-UCCCAGUCGc- -3' miRNA: 3'- cGUCUGCGUCUUCGuGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 49416 | 0.67 | 0.537609 |
Target: 5'- gGCGGACGguGAGGUugUgCAGaCCGc- -3' miRNA: 3'- -CGUCUGCguCUUCGugGgGUC-GGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 44263 | 0.66 | 0.59902 |
Target: 5'- -gGGGCGCcGuAGCACUCguauucgCGGCCGGUg -3' miRNA: 3'- cgUCUGCGuCuUCGUGGG-------GUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 17953 | 0.69 | 0.430115 |
Target: 5'- cCAGAgugaaCGCcGggGCGCCCgGGuuGGUg -3' miRNA: 3'- cGUCU-----GCGuCuuCGUGGGgUCggCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 74844 | 0.79 | 0.090347 |
Target: 5'- uGguGAgGCGGAGGaCACCCgCGGCCGGa -3' miRNA: 3'- -CguCUgCGUCUUC-GUGGG-GUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 56516 | 0.67 | 0.527396 |
Target: 5'- -aAGugGCuGGAGCGCCUCGucaaccGCUGGg -3' miRNA: 3'- cgUCugCGuCUUCGUGGGGU------CGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 74652 | 0.8 | 0.083205 |
Target: 5'- aCAGAgcuCaCAGAGGCACUCCAGCCGGUa -3' miRNA: 3'- cGUCU---GcGUCUUCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 53621 | 0.74 | 0.200859 |
Target: 5'- cCAGACGgAGGccaagaacgacGGCGCCCUGGUCGGUg -3' miRNA: 3'- cGUCUGCgUCU-----------UCGUGGGGUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 22392 | 0.72 | 0.252026 |
Target: 5'- aGUGGACGCu--GGuCACCCCGGCCGcGg -3' miRNA: 3'- -CGUCUGCGucuUC-GUGGGGUCGGC-Ca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 73159 | 0.72 | 0.264764 |
Target: 5'- cGgAGAcCGCAGuacuGGCACUCCAGCCGc- -3' miRNA: 3'- -CgUCU-GCGUCu---UCGUGGGGUCGGCca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 5825 | 0.71 | 0.298883 |
Target: 5'- uGCGGcACG-AGAAGCGCCUCAGCCc-- -3' miRNA: 3'- -CGUC-UGCgUCUUCGUGGGGUCGGcca -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 29012 | 0.71 | 0.327791 |
Target: 5'- uGCAgGugGUuucaucagguaggGGGAGCGCCUCAGUCGGc -3' miRNA: 3'- -CGU-CugCG-------------UCUUCGUGGGGUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 2640 | 0.71 | 0.328559 |
Target: 5'- --cGcCGCGGAcGGCACCCUAGcCCGGg -3' miRNA: 3'- cguCuGCGUCU-UCGUGGGGUC-GGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 16279 | 0.7 | 0.341814 |
Target: 5'- cCAGGCGCAGGgcuaccAGCuCCCCgagggcauccccgcGGCCGGa -3' miRNA: 3'- cGUCUGCGUCU------UCGuGGGG--------------UCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 19652 | 0.66 | 0.568627 |
Target: 5'- -gGGACgGCAGcGGCAUCCguaugCAGCUGGUc -3' miRNA: 3'- cgUCUG-CGUCuUCGUGGG-----GUCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 14778 | 0.68 | 0.445933 |
Target: 5'- cGCGGACGCccuggccauccugaAGGcuGGCGCCC-AGCUGGc -3' miRNA: 3'- -CGUCUGCG--------------UCU--UCGUGGGgUCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 60615 | 0.68 | 0.448758 |
Target: 5'- gGCAcuuGACgaGCAGAgcGGCACCCUcaAGUCGGg -3' miRNA: 3'- -CGU---CUG--CGUCU--UCGUGGGG--UCGGCCa -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 50307 | 0.68 | 0.463989 |
Target: 5'- gGCcGACGCuGAacucaugGGCACCCCcgaggaaauccgagAGCUGGUc -3' miRNA: 3'- -CGuCUGCGuCU-------UCGUGGGG--------------UCGGCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 45381 | 0.68 | 0.487329 |
Target: 5'- -aAGGCGgGGGAGCACCUCAaggGCagCGGUg -3' miRNA: 3'- cgUCUGCgUCUUCGUGGGGU---CG--GCCA- -5' |
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18436 | 3' | -59.1 | NC_004681.1 | + | 8513 | 0.67 | 0.537609 |
Target: 5'- cGCGGACGguGAGacCGCCCCcgcGGCCa-- -3' miRNA: 3'- -CGUCUGCguCUUc-GUGGGG---UCGGcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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