Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18437 | 3' | -56.2 | NC_004681.1 | + | 32064 | 1.08 | 0.001227 |
Target: 5'- aAGGAAGGCGUCCUCGAGAAGCUGGACc -3' miRNA: 3'- -UCCUUCCGCAGGAGCUCUUCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 475 | 0.82 | 0.091901 |
Target: 5'- uGGGGAGGCG-CCUggcCGAGAuGCUGGGCg -3' miRNA: 3'- -UCCUUCCGCaGGA---GCUCUuCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 10004 | 0.75 | 0.274062 |
Target: 5'- gGGGAAGGCGUCggCcAGcuGCUGGGCg -3' miRNA: 3'- -UCCUUCCGCAGgaGcUCuuCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 51495 | 0.74 | 0.31738 |
Target: 5'- cGGAGGGCacGUUCugcugcaugUCGAGGAGCUGGGg -3' miRNA: 3'- uCCUUCCG--CAGG---------AGCUCUUCGACCUg -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 40856 | 0.73 | 0.349016 |
Target: 5'- cGGAGGaGCGUCCUCGcGGuacaAGgUGGGCu -3' miRNA: 3'- uCCUUC-CGCAGGAGCuCU----UCgACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 39001 | 0.7 | 0.50039 |
Target: 5'- gAGGAAGGCGUCaacgUCGAcggccugcuGGuggugcgcccacccaAGCUGGACc -3' miRNA: 3'- -UCCUUCCGCAGg---AGCU---------CU---------------UCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 73578 | 0.7 | 0.506498 |
Target: 5'- cAGGAAcGGCcguguuggcacuGUCCUCGAGGAcaauGgUGGGCa -3' miRNA: 3'- -UCCUU-CCG------------CAGGAGCUCUU----CgACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 46708 | 0.7 | 0.515719 |
Target: 5'- cGGGgcGGgGUCCUCGGcGAgugggccGGuCUGGGCu -3' miRNA: 3'- -UCCuuCCgCAGGAGCU-CU-------UC-GACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 5470 | 0.69 | 0.558507 |
Target: 5'- uGGGAguGGGuCG-CCUCGAc--GCUGGACa -3' miRNA: 3'- -UCCU--UCC-GCaGGAGCUcuuCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 52075 | 0.69 | 0.569105 |
Target: 5'- cAGGGAGGCGUCgUCGuggauuuccAGggGgaGGuCc -3' miRNA: 3'- -UCCUUCCGCAGgAGC---------UCuuCgaCCuG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 1029 | 0.69 | 0.569105 |
Target: 5'- gAGGucGGCGUCUUgGAGGaugAGCUcgaGGAUg -3' miRNA: 3'- -UCCuuCCGCAGGAgCUCU---UCGA---CCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 51299 | 0.69 | 0.579753 |
Target: 5'- cGGGguGGCGUUCUUggaGAGAAGCaUGG-Cg -3' miRNA: 3'- -UCCuuCCGCAGGAG---CUCUUCG-ACCuG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 16391 | 0.68 | 0.633448 |
Target: 5'- cGGGGAuGC--CCUCGGGGAGCUGGu- -3' miRNA: 3'- -UCCUUcCGcaGGAGCUCUUCGACCug -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 48860 | 0.67 | 0.64422 |
Target: 5'- cAGGuguAGccgcCGUCCUgGAGguGCUGGACc -3' miRNA: 3'- -UCCu--UCc---GCAGGAgCUCuuCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 1866 | 0.67 | 0.65498 |
Target: 5'- gAGGAGGGCGauggCCUgGGGAAcuacCUGGGu -3' miRNA: 3'- -UCCUUCCGCa---GGAgCUCUUc---GACCUg -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 1281 | 0.67 | 0.665721 |
Target: 5'- cGGAGGGCG-CC-CaGGAAGUcugGGACg -3' miRNA: 3'- uCCUUCCGCaGGaGcUCUUCGa--CCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 59006 | 0.67 | 0.680705 |
Target: 5'- cGGAgcAGuaGUCCUCGAuguccucgucagcgaGAAGCUGG-Cg -3' miRNA: 3'- uCCU--UCcgCAGGAGCU---------------CUUCGACCuG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 50216 | 0.66 | 0.704065 |
Target: 5'- cAGcGAGGGCGaugagcUCCUCGAGGcugauguAGCcguccuuguaguccUGGACg -3' miRNA: 3'- -UC-CUUCCGC------AGGAGCUCU-------UCG--------------ACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 10710 | 0.66 | 0.712484 |
Target: 5'- cAGGGAGaCGUCCgugaCgugguaguggacaccGAGAGGCUGGAa -3' miRNA: 3'- -UCCUUCcGCAGGa---G---------------CUCUUCGACCUg -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 50993 | 0.66 | 0.718768 |
Target: 5'- uGGAAcaccGGCGUCgacgUCGGGGAGCUcuuccacaaGGGCg -3' miRNA: 3'- uCCUU----CCGCAGg---AGCUCUUCGA---------CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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