Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18437 | 3' | -56.2 | NC_004681.1 | + | 37638 | 0.66 | 0.72294 |
Target: 5'- aAGGAcauccaccacaucaaGGGUGUCaUCGAGAAGUcGGGg -3' miRNA: 3'- -UCCU---------------UCCGCAGgAGCUCUUCGaCCUg -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 16596 | 0.66 | 0.747661 |
Target: 5'- uGGGAguuccaguugccgGGGCGcggcgccgaguagUCCgUGGGggGCUGGAa -3' miRNA: 3'- -UCCU-------------UCCGC-------------AGGaGCUCuuCGACCUg -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 37386 | 0.66 | 0.748678 |
Target: 5'- uGGAGcugacccGGCGcaaCCUgGAGAcguugcucaagaAGCUGGACg -3' miRNA: 3'- uCCUU-------CCGCa--GGAgCUCU------------UCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 11833 | 0.66 | 0.749694 |
Target: 5'- cAGGAGGGUGUCCUUcAGGuugccgucAGUgGGAUc -3' miRNA: 3'- -UCCUUCCGCAGGAGcUCU--------UCGaCCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 59317 | 0.66 | 0.759788 |
Target: 5'- gAGGAGcuGaCGUUCU--GGAAGCUGGACg -3' miRNA: 3'- -UCCUUc-C-GCAGGAgcUCUUCGACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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