Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18437 | 3' | -56.2 | NC_004681.1 | + | 51495 | 0.74 | 0.31738 |
Target: 5'- cGGAGGGCacGUUCugcugcaugUCGAGGAGCUGGGg -3' miRNA: 3'- uCCUUCCG--CAGG---------AGCUCUUCGACCUg -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 52075 | 0.69 | 0.569105 |
Target: 5'- cAGGGAGGCGUCgUCGuggauuuccAGggGgaGGuCc -3' miRNA: 3'- -UCCUUCCGCAGgAGC---------UCuuCgaCCuG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 59006 | 0.67 | 0.680705 |
Target: 5'- cGGAgcAGuaGUCCUCGAuguccucgucagcgaGAAGCUGG-Cg -3' miRNA: 3'- uCCU--UCcgCAGGAGCU---------------CUUCGACCuG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 59317 | 0.66 | 0.759788 |
Target: 5'- gAGGAGcuGaCGUUCU--GGAAGCUGGACg -3' miRNA: 3'- -UCCUUc-C-GCAGGAgcUCUUCGACCUG- -5' |
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18437 | 3' | -56.2 | NC_004681.1 | + | 73578 | 0.7 | 0.506498 |
Target: 5'- cAGGAAcGGCcguguuggcacuGUCCUCGAGGAcaauGgUGGGCa -3' miRNA: 3'- -UCCUU-CCG------------CAGGAGCUCUU----CgACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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