Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18437 | 3' | -56.2 | NC_004681.1 | + | 46708 | 0.7 | 0.515719 |
|
Target: 5'- cGGGgcGGgGUCCUCGGcGAgugggccGGuCUGGGCu -3' miRNA: 3'- -UCCuuCCgCAGGAGCU-CU-------UC-GACCUG- -5' |
|||||||
| 18437 | 3' | -56.2 | NC_004681.1 | + | 73578 | 0.7 | 0.506498 |
|
Target: 5'- cAGGAAcGGCcguguuggcacuGUCCUCGAGGAcaauGgUGGGCa -3' miRNA: 3'- -UCCUU-CCG------------CAGGAGCUCUU----CgACCUG- -5' |
|||||||
| 18437 | 3' | -56.2 | NC_004681.1 | + | 51495 | 0.74 | 0.31738 |
|
Target: 5'- cGGAGGGCacGUUCugcugcaugUCGAGGAGCUGGGg -3' miRNA: 3'- uCCUUCCG--CAGG---------AGCUCUUCGACCUg -5' |
|||||||
| 18437 | 3' | -56.2 | NC_004681.1 | + | 10004 | 0.75 | 0.274062 |
|
Target: 5'- gGGGAAGGCGUCggCcAGcuGCUGGGCg -3' miRNA: 3'- -UCCUUCCGCAGgaGcUCuuCGACCUG- -5' |
|||||||
| 18437 | 3' | -56.2 | NC_004681.1 | + | 59317 | 0.66 | 0.759788 |
|
Target: 5'- gAGGAGcuGaCGUUCU--GGAAGCUGGACg -3' miRNA: 3'- -UCCUUc-C-GCAGGAgcUCUUCGACCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home