miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18437 5' -57.3 NC_004681.1 + 24829 0.66 0.710462
Target:  5'- gUCGaccUCAUCGGCGUCggcggcgCGGGcGGCGGcCg -3'
miRNA:   3'- -AGC---AGUGGCCGUAG-------GUCCuUCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 12505 0.66 0.708387
Target:  5'- cCGUCACCGGCucaCCGacgagcgucgccgcGGuGGUGGUg -3'
miRNA:   3'- aGCAGUGGCCGua-GGU--------------CCuUCGCCAg -5'
18437 5' -57.3 NC_004681.1 + 1053 0.66 0.701102
Target:  5'- cUCGUagCGCCGGUAggUCAGGGugaGGUCg -3'
miRNA:   3'- -AGCA--GUGGCCGUa-GGUCCUucgCCAG- -5'
18437 5' -57.3 NC_004681.1 + 51735 0.66 0.701102
Target:  5'- gUCGUCGgCGGCcgCCccGgcGCGGg- -3'
miRNA:   3'- -AGCAGUgGCCGuaGGucCuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 64482 0.66 0.690643
Target:  5'- gCGuUCGCCGGUccauUCCuGGucGcCGGUCa -3'
miRNA:   3'- aGC-AGUGGCCGu---AGGuCCuuC-GCCAG- -5'
18437 5' -57.3 NC_004681.1 + 22109 0.66 0.690643
Target:  5'- cCGcaUCACCGGCuUCCAGGAAuucGUGcaaaucGUCa -3'
miRNA:   3'- aGC--AGUGGCCGuAGGUCCUU---CGC------CAG- -5'
18437 5' -57.3 NC_004681.1 + 8643 0.66 0.689594
Target:  5'- cCGUCGaaccgaagggguuCUGGCcgauggCCGcGGggGCGGUCu -3'
miRNA:   3'- aGCAGU-------------GGCCGua----GGU-CCuuCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 66888 0.67 0.648378
Target:  5'- gCGUacUCGGgGUCCAGGGAGUGcUCa -3'
miRNA:   3'- aGCAguGGCCgUAGGUCCUUCGCcAG- -5'
18437 5' -57.3 NC_004681.1 + 64597 0.67 0.648378
Target:  5'- uUCGUCaggugACCGGCGaCCAGGAA-UGGa- -3'
miRNA:   3'- -AGCAG-----UGGCCGUaGGUCCUUcGCCag -5'
18437 5' -57.3 NC_004681.1 + 23724 0.67 0.648378
Target:  5'- cCGUCGUCGGCGaacgggaCCAGGAggaGGCGGa- -3'
miRNA:   3'- aGCAGUGGCCGUa------GGUCCU---UCGCCag -5'
18437 5' -57.3 NC_004681.1 + 40547 0.67 0.637753
Target:  5'- aUGUCAUCGGCcgCCucaAGGgcGCcgaGGUCc -3'
miRNA:   3'- aGCAGUGGCCGuaGG---UCCuuCG---CCAG- -5'
18437 5' -57.3 NC_004681.1 + 7397 0.67 0.637753
Target:  5'- aCGUCGCUGGCGUgCAGcucgucgcAGGCGG-Cg -3'
miRNA:   3'- aGCAGUGGCCGUAgGUCc-------UUCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 63833 0.67 0.631376
Target:  5'- uUCGUCcCCGGUucaaAUCCGGGcGGGCcuugccucgcgccguGGUCg -3'
miRNA:   3'- -AGCAGuGGCCG----UAGGUCC-UUCG---------------CCAG- -5'
18437 5' -57.3 NC_004681.1 + 352 0.67 0.627124
Target:  5'- cCGUCAUgGGCGccaUCCgcgAGGAcgagcccGCGGUCa -3'
miRNA:   3'- aGCAGUGgCCGU---AGG---UCCUu------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 40249 0.67 0.624999
Target:  5'- cUCGaUCugCGGCGUCgCGGccugccugucccGGGCGGUCa -3'
miRNA:   3'- -AGC-AGugGCCGUAG-GUCc-----------UUCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 72766 0.67 0.605886
Target:  5'- gCGUCGgCaGGC-UCCGGGAAaCGGUUa -3'
miRNA:   3'- aGCAGUgG-CCGuAGGUCCUUcGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 62692 0.67 0.605886
Target:  5'- gCGUCGUCGGCG-CCGGauGAGGCGGa- -3'
miRNA:   3'- aGCAGUGGCCGUaGGUC--CUUCGCCag -5'
18437 5' -57.3 NC_004681.1 + 65287 0.68 0.595295
Target:  5'- ---cCACCaGGCGUCCAGGuggcgcuuGGCGG-Cg -3'
miRNA:   3'- agcaGUGG-CCGUAGGUCCu-------UCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 59640 0.68 0.595295
Target:  5'- aCGUCcacaaGCgGGCGUCC--GAAGCGGUg -3'
miRNA:   3'- aGCAG-----UGgCCGUAGGucCUUCGCCAg -5'
18437 5' -57.3 NC_004681.1 + 41868 0.68 0.584733
Target:  5'- cCGUCgaACCuggaGGCGUgCAGGAGguucccgucGCGGUCg -3'
miRNA:   3'- aGCAG--UGG----CCGUAgGUCCUU---------CGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.