Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18437 | 5' | -57.3 | NC_004681.1 | + | 1053 | 0.66 | 0.701102 |
Target: 5'- cUCGUagCGCCGGUAggUCAGGGugaGGUCg -3' miRNA: 3'- -AGCA--GUGGCCGUa-GGUCCUucgCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 12505 | 0.66 | 0.708387 |
Target: 5'- cCGUCACCGGCucaCCGacgagcgucgccgcGGuGGUGGUg -3' miRNA: 3'- aGCAGUGGCCGua-GGU--------------CCuUCGCCAg -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 24829 | 0.66 | 0.710462 |
Target: 5'- gUCGaccUCAUCGGCGUCggcggcgCGGGcGGCGGcCg -3' miRNA: 3'- -AGC---AGUGGCCGUAG-------GUCCuUCGCCaG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 51735 | 0.66 | 0.701102 |
Target: 5'- gUCGUCGgCGGCcgCCccGgcGCGGg- -3' miRNA: 3'- -AGCAGUgGCCGuaGGucCuuCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 22109 | 0.66 | 0.690643 |
Target: 5'- cCGcaUCACCGGCuUCCAGGAAuucGUGcaaaucGUCa -3' miRNA: 3'- aGC--AGUGGCCGuAGGUCCUU---CGC------CAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 64482 | 0.66 | 0.690643 |
Target: 5'- gCGuUCGCCGGUccauUCCuGGucGcCGGUCa -3' miRNA: 3'- aGC-AGUGGCCGu---AGGuCCuuC-GCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 8643 | 0.66 | 0.689594 |
Target: 5'- cCGUCGaaccgaagggguuCUGGCcgauggCCGcGGggGCGGUCu -3' miRNA: 3'- aGCAGU-------------GGCCGua----GGU-CCuuCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 63833 | 0.67 | 0.631376 |
Target: 5'- uUCGUCcCCGGUucaaAUCCGGGcGGGCcuugccucgcgccguGGUCg -3' miRNA: 3'- -AGCAGuGGCCG----UAGGUCC-UUCG---------------CCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 72766 | 0.67 | 0.605886 |
Target: 5'- gCGUCGgCaGGC-UCCGGGAAaCGGUUa -3' miRNA: 3'- aGCAGUgG-CCGuAGGUCCUUcGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 40547 | 0.67 | 0.637753 |
Target: 5'- aUGUCAUCGGCcgCCucaAGGgcGCcgaGGUCc -3' miRNA: 3'- aGCAGUGGCCGuaGG---UCCuuCG---CCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 7397 | 0.67 | 0.637753 |
Target: 5'- aCGUCGCUGGCGUgCAGcucgucgcAGGCGG-Cg -3' miRNA: 3'- aGCAGUGGCCGUAgGUCc-------UUCGCCaG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 66888 | 0.67 | 0.648378 |
Target: 5'- gCGUacUCGGgGUCCAGGGAGUGcUCa -3' miRNA: 3'- aGCAguGGCCgUAGGUCCUUCGCcAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 64597 | 0.67 | 0.648378 |
Target: 5'- uUCGUCaggugACCGGCGaCCAGGAA-UGGa- -3' miRNA: 3'- -AGCAG-----UGGCCGUaGGUCCUUcGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 23724 | 0.67 | 0.648378 |
Target: 5'- cCGUCGUCGGCGaacgggaCCAGGAggaGGCGGa- -3' miRNA: 3'- aGCAGUGGCCGUa------GGUCCU---UCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 62692 | 0.67 | 0.605886 |
Target: 5'- gCGUCGUCGGCG-CCGGauGAGGCGGa- -3' miRNA: 3'- aGCAGUGGCCGUaGGUC--CUUCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 352 | 0.67 | 0.627124 |
Target: 5'- cCGUCAUgGGCGccaUCCgcgAGGAcgagcccGCGGUCa -3' miRNA: 3'- aGCAGUGgCCGU---AGG---UCCUu------CGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 40249 | 0.67 | 0.624999 |
Target: 5'- cUCGaUCugCGGCGUCgCGGccugccugucccGGGCGGUCa -3' miRNA: 3'- -AGC-AGugGCCGUAG-GUCc-----------UUCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 52336 | 0.68 | 0.553297 |
Target: 5'- gUCGcCACCGGCcagguuggucagGUCgGGGAuGGCGGg- -3' miRNA: 3'- -AGCaGUGGCCG------------UAGgUCCU-UCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 10296 | 0.68 | 0.584733 |
Target: 5'- gUGUgGCCGGUGcUCCacucggagccgGGGAGGcCGGUCg -3' miRNA: 3'- aGCAgUGGCCGU-AGG-----------UCCUUC-GCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 41868 | 0.68 | 0.584733 |
Target: 5'- cCGUCgaACCuggaGGCGUgCAGGAGguucccgucGCGGUCg -3' miRNA: 3'- aGCAG--UGG----CCGUAgGUCCUU---------CGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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