miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18437 5' -57.3 NC_004681.1 + 41868 0.68 0.584733
Target:  5'- cCGUCgaACCuggaGGCGUgCAGGAGguucccgucGCGGUCg -3'
miRNA:   3'- aGCAG--UGG----CCGUAgGUCCUU---------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 52336 0.68 0.553297
Target:  5'- gUCGcCACCGGCcagguuggucagGUCgGGGAuGGCGGg- -3'
miRNA:   3'- -AGCaGUGGCCG------------UAGgUCCU-UCGCCag -5'
18437 5' -57.3 NC_004681.1 + 11585 0.68 0.553297
Target:  5'- gUCGUCGCCGuaGUCaagccagaAGGGAGCG-UCu -3'
miRNA:   3'- -AGCAGUGGCcgUAGg-------UCCUUCGCcAG- -5'
18437 5' -57.3 NC_004681.1 + 50799 0.68 0.542926
Target:  5'- uUCGUagauguaGCCGuGC-UCCAGGAGgGgGGUCa -3'
miRNA:   3'- -AGCAg------UGGC-CGuAGGUCCUU-CgCCAG- -5'
18437 5' -57.3 NC_004681.1 + 24161 0.69 0.532619
Target:  5'- gCGcCACCgacaauGGCGUCCAGGAAGUucuGGa- -3'
miRNA:   3'- aGCaGUGG------CCGUAGGUCCUUCG---CCag -5'
18437 5' -57.3 NC_004681.1 + 9095 0.69 0.529541
Target:  5'- gUCGUCACCGGCGccgcuggcucgggcUCUGGcGuuGCGGg- -3'
miRNA:   3'- -AGCAGUGGCCGU--------------AGGUC-CuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 856 0.69 0.522384
Target:  5'- cCGUCAUgggCGGCAgggCCGGGuAGGCcGUCa -3'
miRNA:   3'- aGCAGUG---GCCGUa--GGUCC-UUCGcCAG- -5'
18437 5' -57.3 NC_004681.1 + 25884 0.7 0.466637
Target:  5'- uUCGUCGCCGagccgauccgaaaguGCAugUCCGGGGucAGCGG-Ca -3'
miRNA:   3'- -AGCAGUGGC---------------CGU--AGGUCCU--UCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 50488 0.7 0.453179
Target:  5'- -aGUCGCCGuaGUCguGGuAGCGGUa -3'
miRNA:   3'- agCAGUGGCcgUAGguCCuUCGCCAg -5'
18437 5' -57.3 NC_004681.1 + 3011 0.7 0.443697
Target:  5'- cCGUCGCCcagccaGGCccCCAGGAuguAGgGGUCg -3'
miRNA:   3'- aGCAGUGG------CCGuaGGUCCU---UCgCCAG- -5'
18437 5' -57.3 NC_004681.1 + 67990 0.7 0.438061
Target:  5'- -aGUCGCCGGUGUCaAGGGcgacgacgaagggugAGUGGUCc -3'
miRNA:   3'- agCAGUGGCCGUAGgUCCU---------------UCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 65420 0.71 0.406923
Target:  5'- -aGUCGCCGGgaGUCgAcGGAGGaCGGUCa -3'
miRNA:   3'- agCAGUGGCCg-UAGgU-CCUUC-GCCAG- -5'
18437 5' -57.3 NC_004681.1 + 5996 0.74 0.254072
Target:  5'- aUCGUCuuGCCGGUAUUCgAGGAGccagcgugcgcGCGGUCg -3'
miRNA:   3'- -AGCAG--UGGCCGUAGG-UCCUU-----------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 10751 0.76 0.192098
Target:  5'- gCGggCACCGGgGgcgCCAGGcAGCGGUCa -3'
miRNA:   3'- aGCa-GUGGCCgUa--GGUCCuUCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 39164 0.79 0.136288
Target:  5'- cCGagACCGGCAUCCGGGccGCGGa- -3'
miRNA:   3'- aGCagUGGCCGUAGGUCCuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 32103 1.1 0.000762
Target:  5'- gUCGUCACCGGCAUCCAGGAAGCGGUCa -3'
miRNA:   3'- -AGCAGUGGCCGUAGGUCCUUCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.