miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18437 5' -57.3 NC_004681.1 + 352 0.67 0.627124
Target:  5'- cCGUCAUgGGCGccaUCCgcgAGGAcgagcccGCGGUCa -3'
miRNA:   3'- aGCAGUGgCCGU---AGG---UCCUu------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 856 0.69 0.522384
Target:  5'- cCGUCAUgggCGGCAgggCCGGGuAGGCcGUCa -3'
miRNA:   3'- aGCAGUG---GCCGUa--GGUCC-UUCGcCAG- -5'
18437 5' -57.3 NC_004681.1 + 1053 0.66 0.701102
Target:  5'- cUCGUagCGCCGGUAggUCAGGGugaGGUCg -3'
miRNA:   3'- -AGCA--GUGGCCGUa-GGUCCUucgCCAG- -5'
18437 5' -57.3 NC_004681.1 + 3011 0.7 0.443697
Target:  5'- cCGUCGCCcagccaGGCccCCAGGAuguAGgGGUCg -3'
miRNA:   3'- aGCAGUGG------CCGuaGGUCCU---UCgCCAG- -5'
18437 5' -57.3 NC_004681.1 + 5996 0.74 0.254072
Target:  5'- aUCGUCuuGCCGGUAUUCgAGGAGccagcgugcgcGCGGUCg -3'
miRNA:   3'- -AGCAG--UGGCCGUAGG-UCCUU-----------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 7397 0.67 0.637753
Target:  5'- aCGUCGCUGGCGUgCAGcucgucgcAGGCGG-Cg -3'
miRNA:   3'- aGCAGUGGCCGUAgGUCc-------UUCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 8643 0.66 0.689594
Target:  5'- cCGUCGaaccgaagggguuCUGGCcgauggCCGcGGggGCGGUCu -3'
miRNA:   3'- aGCAGU-------------GGCCGua----GGU-CCuuCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 9095 0.69 0.529541
Target:  5'- gUCGUCACCGGCGccgcuggcucgggcUCUGGcGuuGCGGg- -3'
miRNA:   3'- -AGCAGUGGCCGU--------------AGGUC-CuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 10296 0.68 0.584733
Target:  5'- gUGUgGCCGGUGcUCCacucggagccgGGGAGGcCGGUCg -3'
miRNA:   3'- aGCAgUGGCCGU-AGG-----------UCCUUC-GCCAG- -5'
18437 5' -57.3 NC_004681.1 + 10751 0.76 0.192098
Target:  5'- gCGggCACCGGgGgcgCCAGGcAGCGGUCa -3'
miRNA:   3'- aGCa-GUGGCCgUa--GGUCCuUCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 11585 0.68 0.553297
Target:  5'- gUCGUCGCCGuaGUCaagccagaAGGGAGCG-UCu -3'
miRNA:   3'- -AGCAGUGGCcgUAGg-------UCCUUCGCcAG- -5'
18437 5' -57.3 NC_004681.1 + 12505 0.66 0.708387
Target:  5'- cCGUCACCGGCucaCCGacgagcgucgccgcGGuGGUGGUg -3'
miRNA:   3'- aGCAGUGGCCGua-GGU--------------CCuUCGCCAg -5'
18437 5' -57.3 NC_004681.1 + 22109 0.66 0.690643
Target:  5'- cCGcaUCACCGGCuUCCAGGAAuucGUGcaaaucGUCa -3'
miRNA:   3'- aGC--AGUGGCCGuAGGUCCUU---CGC------CAG- -5'
18437 5' -57.3 NC_004681.1 + 23724 0.67 0.648378
Target:  5'- cCGUCGUCGGCGaacgggaCCAGGAggaGGCGGa- -3'
miRNA:   3'- aGCAGUGGCCGUa------GGUCCU---UCGCCag -5'
18437 5' -57.3 NC_004681.1 + 24161 0.69 0.532619
Target:  5'- gCGcCACCgacaauGGCGUCCAGGAAGUucuGGa- -3'
miRNA:   3'- aGCaGUGG------CCGUAGGUCCUUCG---CCag -5'
18437 5' -57.3 NC_004681.1 + 24829 0.66 0.710462
Target:  5'- gUCGaccUCAUCGGCGUCggcggcgCGGGcGGCGGcCg -3'
miRNA:   3'- -AGC---AGUGGCCGUAG-------GUCCuUCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 25884 0.7 0.466637
Target:  5'- uUCGUCGCCGagccgauccgaaaguGCAugUCCGGGGucAGCGG-Ca -3'
miRNA:   3'- -AGCAGUGGC---------------CGU--AGGUCCU--UCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 32103 1.1 0.000762
Target:  5'- gUCGUCACCGGCAUCCAGGAAGCGGUCa -3'
miRNA:   3'- -AGCAGUGGCCGUAGGUCCUUCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 39164 0.79 0.136288
Target:  5'- cCGagACCGGCAUCCGGGccGCGGa- -3'
miRNA:   3'- aGCagUGGCCGUAGGUCCuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 40249 0.67 0.624999
Target:  5'- cUCGaUCugCGGCGUCgCGGccugccugucccGGGCGGUCa -3'
miRNA:   3'- -AGC-AGugGCCGUAG-GUCc-----------UUCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.