Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18437 | 5' | -57.3 | NC_004681.1 | + | 72766 | 0.67 | 0.605886 |
Target: 5'- gCGUCGgCaGGC-UCCGGGAAaCGGUUa -3' miRNA: 3'- aGCAGUgG-CCGuAGGUCCUUcGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 67990 | 0.7 | 0.438061 |
Target: 5'- -aGUCGCCGGUGUCaAGGGcgacgacgaagggugAGUGGUCc -3' miRNA: 3'- agCAGUGGCCGUAGgUCCU---------------UCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 66888 | 0.67 | 0.648378 |
Target: 5'- gCGUacUCGGgGUCCAGGGAGUGcUCa -3' miRNA: 3'- aGCAguGGCCgUAGGUCCUUCGCcAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 65420 | 0.71 | 0.406923 |
Target: 5'- -aGUCGCCGGgaGUCgAcGGAGGaCGGUCa -3' miRNA: 3'- agCAGUGGCCg-UAGgU-CCUUC-GCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 65287 | 0.68 | 0.595295 |
Target: 5'- ---cCACCaGGCGUCCAGGuggcgcuuGGCGG-Cg -3' miRNA: 3'- agcaGUGG-CCGUAGGUCCu-------UCGCCaG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 64597 | 0.67 | 0.648378 |
Target: 5'- uUCGUCaggugACCGGCGaCCAGGAA-UGGa- -3' miRNA: 3'- -AGCAG-----UGGCCGUaGGUCCUUcGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 64482 | 0.66 | 0.690643 |
Target: 5'- gCGuUCGCCGGUccauUCCuGGucGcCGGUCa -3' miRNA: 3'- aGC-AGUGGCCGu---AGGuCCuuC-GCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 63833 | 0.67 | 0.631376 |
Target: 5'- uUCGUCcCCGGUucaaAUCCGGGcGGGCcuugccucgcgccguGGUCg -3' miRNA: 3'- -AGCAGuGGCCG----UAGGUCC-UUCG---------------CCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 62692 | 0.67 | 0.605886 |
Target: 5'- gCGUCGUCGGCG-CCGGauGAGGCGGa- -3' miRNA: 3'- aGCAGUGGCCGUaGGUC--CUUCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 59640 | 0.68 | 0.595295 |
Target: 5'- aCGUCcacaaGCgGGCGUCC--GAAGCGGUg -3' miRNA: 3'- aGCAG-----UGgCCGUAGGucCUUCGCCAg -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 52336 | 0.68 | 0.553297 |
Target: 5'- gUCGcCACCGGCcagguuggucagGUCgGGGAuGGCGGg- -3' miRNA: 3'- -AGCaGUGGCCG------------UAGgUCCU-UCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 51735 | 0.66 | 0.701102 |
Target: 5'- gUCGUCGgCGGCcgCCccGgcGCGGg- -3' miRNA: 3'- -AGCAGUgGCCGuaGGucCuuCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 50799 | 0.68 | 0.542926 |
Target: 5'- uUCGUagauguaGCCGuGC-UCCAGGAGgGgGGUCa -3' miRNA: 3'- -AGCAg------UGGC-CGuAGGUCCUU-CgCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 50488 | 0.7 | 0.453179 |
Target: 5'- -aGUCGCCGuaGUCguGGuAGCGGUa -3' miRNA: 3'- agCAGUGGCcgUAGguCCuUCGCCAg -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 41868 | 0.68 | 0.584733 |
Target: 5'- cCGUCgaACCuggaGGCGUgCAGGAGguucccgucGCGGUCg -3' miRNA: 3'- aGCAG--UGG----CCGUAgGUCCUU---------CGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 40547 | 0.67 | 0.637753 |
Target: 5'- aUGUCAUCGGCcgCCucaAGGgcGCcgaGGUCc -3' miRNA: 3'- aGCAGUGGCCGuaGG---UCCuuCG---CCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 40249 | 0.67 | 0.624999 |
Target: 5'- cUCGaUCugCGGCGUCgCGGccugccugucccGGGCGGUCa -3' miRNA: 3'- -AGC-AGugGCCGUAG-GUCc-----------UUCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 39164 | 0.79 | 0.136288 |
Target: 5'- cCGagACCGGCAUCCGGGccGCGGa- -3' miRNA: 3'- aGCagUGGCCGUAGGUCCuuCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 32103 | 1.1 | 0.000762 |
Target: 5'- gUCGUCACCGGCAUCCAGGAAGCGGUCa -3' miRNA: 3'- -AGCAGUGGCCGUAGGUCCUUCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 25884 | 0.7 | 0.466637 |
Target: 5'- uUCGUCGCCGagccgauccgaaaguGCAugUCCGGGGucAGCGG-Ca -3' miRNA: 3'- -AGCAGUGGC---------------CGU--AGGUCCU--UCGCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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