miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18437 5' -57.3 NC_004681.1 + 32103 1.1 0.000762
Target:  5'- gUCGUCACCGGCAUCCAGGAAGCGGUCa -3'
miRNA:   3'- -AGCAGUGGCCGUAGGUCCUUCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 24829 0.66 0.710462
Target:  5'- gUCGaccUCAUCGGCGUCggcggcgCGGGcGGCGGcCg -3'
miRNA:   3'- -AGC---AGUGGCCGUAG-------GUCCuUCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 51735 0.66 0.701102
Target:  5'- gUCGUCGgCGGCcgCCccGgcGCGGg- -3'
miRNA:   3'- -AGCAGUgGCCGuaGGucCuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 22109 0.66 0.690643
Target:  5'- cCGcaUCACCGGCuUCCAGGAAuucGUGcaaaucGUCa -3'
miRNA:   3'- aGC--AGUGGCCGuAGGUCCUU---CGC------CAG- -5'
18437 5' -57.3 NC_004681.1 + 64482 0.66 0.690643
Target:  5'- gCGuUCGCCGGUccauUCCuGGucGcCGGUCa -3'
miRNA:   3'- aGC-AGUGGCCGu---AGGuCCuuC-GCCAG- -5'
18437 5' -57.3 NC_004681.1 + 63833 0.67 0.631376
Target:  5'- uUCGUCcCCGGUucaaAUCCGGGcGGGCcuugccucgcgccguGGUCg -3'
miRNA:   3'- -AGCAGuGGCCG----UAGGUCC-UUCG---------------CCAG- -5'
18437 5' -57.3 NC_004681.1 + 352 0.67 0.627124
Target:  5'- cCGUCAUgGGCGccaUCCgcgAGGAcgagcccGCGGUCa -3'
miRNA:   3'- aGCAGUGgCCGU---AGG---UCCUu------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 62692 0.67 0.605886
Target:  5'- gCGUCGUCGGCG-CCGGauGAGGCGGa- -3'
miRNA:   3'- aGCAGUGGCCGUaGGUC--CUUCGCCag -5'
18437 5' -57.3 NC_004681.1 + 59640 0.68 0.595295
Target:  5'- aCGUCcacaaGCgGGCGUCC--GAAGCGGUg -3'
miRNA:   3'- aGCAG-----UGgCCGUAGGucCUUCGCCAg -5'
18437 5' -57.3 NC_004681.1 + 9095 0.69 0.529541
Target:  5'- gUCGUCACCGGCGccgcuggcucgggcUCUGGcGuuGCGGg- -3'
miRNA:   3'- -AGCAGUGGCCGU--------------AGGUC-CuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 39164 0.79 0.136288
Target:  5'- cCGagACCGGCAUCCGGGccGCGGa- -3'
miRNA:   3'- aGCagUGGCCGUAGGUCCuuCGCCag -5'
18437 5' -57.3 NC_004681.1 + 24161 0.69 0.532619
Target:  5'- gCGcCACCgacaauGGCGUCCAGGAAGUucuGGa- -3'
miRNA:   3'- aGCaGUGG------CCGUAGGUCCUUCG---CCag -5'
18437 5' -57.3 NC_004681.1 + 856 0.69 0.522384
Target:  5'- cCGUCAUgggCGGCAgggCCGGGuAGGCcGUCa -3'
miRNA:   3'- aGCAGUG---GCCGUa--GGUCC-UUCGcCAG- -5'
18437 5' -57.3 NC_004681.1 + 25884 0.7 0.466637
Target:  5'- uUCGUCGCCGagccgauccgaaaguGCAugUCCGGGGucAGCGG-Ca -3'
miRNA:   3'- -AGCAGUGGC---------------CGU--AGGUCCU--UCGCCaG- -5'
18437 5' -57.3 NC_004681.1 + 50488 0.7 0.453179
Target:  5'- -aGUCGCCGuaGUCguGGuAGCGGUa -3'
miRNA:   3'- agCAGUGGCcgUAGguCCuUCGCCAg -5'
18437 5' -57.3 NC_004681.1 + 3011 0.7 0.443697
Target:  5'- cCGUCGCCcagccaGGCccCCAGGAuguAGgGGUCg -3'
miRNA:   3'- aGCAGUGG------CCGuaGGUCCU---UCgCCAG- -5'
18437 5' -57.3 NC_004681.1 + 67990 0.7 0.438061
Target:  5'- -aGUCGCCGGUGUCaAGGGcgacgacgaagggugAGUGGUCc -3'
miRNA:   3'- agCAGUGGCCGUAGgUCCU---------------UCGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 65420 0.71 0.406923
Target:  5'- -aGUCGCCGGgaGUCgAcGGAGGaCGGUCa -3'
miRNA:   3'- agCAGUGGCCg-UAGgU-CCUUC-GCCAG- -5'
18437 5' -57.3 NC_004681.1 + 5996 0.74 0.254072
Target:  5'- aUCGUCuuGCCGGUAUUCgAGGAGccagcgugcgcGCGGUCg -3'
miRNA:   3'- -AGCAG--UGGCCGUAGG-UCCUU-----------CGCCAG- -5'
18437 5' -57.3 NC_004681.1 + 12505 0.66 0.708387
Target:  5'- cCGUCACCGGCucaCCGacgagcgucgccgcGGuGGUGGUg -3'
miRNA:   3'- aGCAGUGGCCGua-GGU--------------CCuUCGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.