Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18437 | 5' | -57.3 | NC_004681.1 | + | 11585 | 0.68 | 0.553297 |
Target: 5'- gUCGUCGCCGuaGUCaagccagaAGGGAGCG-UCu -3' miRNA: 3'- -AGCAGUGGCcgUAGg-------UCCUUCGCcAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 5996 | 0.74 | 0.254072 |
Target: 5'- aUCGUCuuGCCGGUAUUCgAGGAGccagcgugcgcGCGGUCg -3' miRNA: 3'- -AGCAG--UGGCCGUAGG-UCCUU-----------CGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 65420 | 0.71 | 0.406923 |
Target: 5'- -aGUCGCCGGgaGUCgAcGGAGGaCGGUCa -3' miRNA: 3'- agCAGUGGCCg-UAGgU-CCUUC-GCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 67990 | 0.7 | 0.438061 |
Target: 5'- -aGUCGCCGGUGUCaAGGGcgacgacgaagggugAGUGGUCc -3' miRNA: 3'- agCAGUGGCCGUAGgUCCU---------------UCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 3011 | 0.7 | 0.443697 |
Target: 5'- cCGUCGCCcagccaGGCccCCAGGAuguAGgGGUCg -3' miRNA: 3'- aGCAGUGG------CCGuaGGUCCU---UCgCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 50488 | 0.7 | 0.453179 |
Target: 5'- -aGUCGCCGuaGUCguGGuAGCGGUa -3' miRNA: 3'- agCAGUGGCcgUAGguCCuUCGCCAg -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 25884 | 0.7 | 0.466637 |
Target: 5'- uUCGUCGCCGagccgauccgaaaguGCAugUCCGGGGucAGCGG-Ca -3' miRNA: 3'- -AGCAGUGGC---------------CGU--AGGUCCU--UCGCCaG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 856 | 0.69 | 0.522384 |
Target: 5'- cCGUCAUgggCGGCAgggCCGGGuAGGCcGUCa -3' miRNA: 3'- aGCAGUG---GCCGUa--GGUCC-UUCGcCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 24161 | 0.69 | 0.532619 |
Target: 5'- gCGcCACCgacaauGGCGUCCAGGAAGUucuGGa- -3' miRNA: 3'- aGCaGUGG------CCGUAGGUCCUUCG---CCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 10751 | 0.76 | 0.192098 |
Target: 5'- gCGggCACCGGgGgcgCCAGGcAGCGGUCa -3' miRNA: 3'- aGCa-GUGGCCgUa--GGUCCuUCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 7397 | 0.67 | 0.637753 |
Target: 5'- aCGUCGCUGGCGUgCAGcucgucgcAGGCGG-Cg -3' miRNA: 3'- aGCAGUGGCCGUAgGUCc-------UUCGCCaG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 40249 | 0.67 | 0.624999 |
Target: 5'- cUCGaUCugCGGCGUCgCGGccugccugucccGGGCGGUCa -3' miRNA: 3'- -AGC-AGugGCCGUAG-GUCc-----------UUCGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 52336 | 0.68 | 0.553297 |
Target: 5'- gUCGcCACCGGCcagguuggucagGUCgGGGAuGGCGGg- -3' miRNA: 3'- -AGCaGUGGCCG------------UAGgUCCU-UCGCCag -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 40547 | 0.67 | 0.637753 |
Target: 5'- aUGUCAUCGGCcgCCucaAGGgcGCcgaGGUCc -3' miRNA: 3'- aGCAGUGGCCGuaGG---UCCuuCG---CCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 41868 | 0.68 | 0.584733 |
Target: 5'- cCGUCgaACCuggaGGCGUgCAGGAGguucccgucGCGGUCg -3' miRNA: 3'- aGCAG--UGG----CCGUAgGUCCUU---------CGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 72766 | 0.67 | 0.605886 |
Target: 5'- gCGUCGgCaGGC-UCCGGGAAaCGGUUa -3' miRNA: 3'- aGCAGUgG-CCGuAGGUCCUUcGCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 66888 | 0.67 | 0.648378 |
Target: 5'- gCGUacUCGGgGUCCAGGGAGUGcUCa -3' miRNA: 3'- aGCAguGGCCgUAGGUCCUUCGCcAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 12505 | 0.66 | 0.708387 |
Target: 5'- cCGUCACCGGCucaCCGacgagcgucgccgcGGuGGUGGUg -3' miRNA: 3'- aGCAGUGGCCGua-GGU--------------CCuUCGCCAg -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 10296 | 0.68 | 0.584733 |
Target: 5'- gUGUgGCCGGUGcUCCacucggagccgGGGAGGcCGGUCg -3' miRNA: 3'- aGCAgUGGCCGU-AGG-----------UCCUUC-GCCAG- -5' |
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18437 | 5' | -57.3 | NC_004681.1 | + | 65287 | 0.68 | 0.595295 |
Target: 5'- ---cCACCaGGCGUCCAGGuggcgcuuGGCGG-Cg -3' miRNA: 3'- agcaGUGG-CCGUAGGUCCu-------UCGCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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