miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18438 3' -54 NC_004681.1 + 54963 0.66 0.900194
Target:  5'- gCUGGACGAccGC-CAacAGGUCGUgGACa -3'
miRNA:   3'- gGGCCUGCU--UGaGU--UCCGGUAgCUGg -5'
18438 3' -54 NC_004681.1 + 26081 0.66 0.886366
Target:  5'- aCCCGGGaacCGAAUUCGAGuaCGUCaACg -3'
miRNA:   3'- -GGGCCU---GCUUGAGUUCcgGUAGcUGg -5'
18438 3' -54 NC_004681.1 + 3039 0.66 0.900194
Target:  5'- gCUGG-UGAACUCGgcgcgcguggcGGuGCCGUCGcCCa -3'
miRNA:   3'- gGGCCuGCUUGAGU-----------UC-CGGUAGCuGG- -5'
18438 3' -54 NC_004681.1 + 965 0.66 0.900194
Target:  5'- aCCGGcgcuACGAGCcCcGGGCauuCAUCGACa -3'
miRNA:   3'- gGGCC----UGCUUGaGuUCCG---GUAGCUGg -5'
18438 3' -54 NC_004681.1 + 13007 0.66 0.886366
Target:  5'- aCCgCGGACG-ACgu--GGCCG-CGACUg -3'
miRNA:   3'- -GG-GCCUGCuUGaguuCCGGUaGCUGG- -5'
18438 3' -54 NC_004681.1 + 30142 0.66 0.893404
Target:  5'- gCCUguGGGuCGGGCUC-AGGCgGcgCGGCCg -3'
miRNA:   3'- -GGG--CCU-GCUUGAGuUCCGgUa-GCUGG- -5'
18438 3' -54 NC_004681.1 + 48114 0.66 0.900194
Target:  5'- cCCCGGugGGcaUCGAgaagcagauGGCCcgCGcCCu -3'
miRNA:   3'- -GGGCCugCUugAGUU---------CCGGuaGCuGG- -5'
18438 3' -54 NC_004681.1 + 13885 0.66 0.871564
Target:  5'- gCCgGGACGAcaGCUUggGGgCGcCGuCCu -3'
miRNA:   3'- -GGgCCUGCU--UGAGuuCCgGUaGCuGG- -5'
18438 3' -54 NC_004681.1 + 54380 0.66 0.900194
Target:  5'- aCCCagcuggguGugGAGUUCGAGGUgGUCGACg -3'
miRNA:   3'- -GGGc-------CugCUUGAGUUCCGgUAGCUGg -5'
18438 3' -54 NC_004681.1 + 32764 0.66 0.893404
Target:  5'- gCCCGGuCGGcaauccGCU--GGGCCGcUCGuACCa -3'
miRNA:   3'- -GGGCCuGCU------UGAguUCCGGU-AGC-UGG- -5'
18438 3' -54 NC_004681.1 + 18277 0.66 0.893404
Target:  5'- cUCCGGGCGcgg-CAcGGCCGcaguccUCGACUg -3'
miRNA:   3'- -GGGCCUGCuugaGUuCCGGU------AGCUGG- -5'
18438 3' -54 NC_004681.1 + 60146 0.66 0.871564
Target:  5'- gCUcGACGuAUcCAAGGCCAUUGACa -3'
miRNA:   3'- gGGcCUGCuUGaGUUCCGGUAGCUGg -5'
18438 3' -54 NC_004681.1 + 47878 0.66 0.871564
Target:  5'- -gCGGACGuGACUUggGGUgacauCcgCGGCCg -3'
miRNA:   3'- ggGCCUGC-UUGAGuuCCG-----GuaGCUGG- -5'
18438 3' -54 NC_004681.1 + 30423 0.66 0.871564
Target:  5'- cCCCGaGcCGaAACUCAgGGGCCuucuUCGAUa -3'
miRNA:   3'- -GGGC-CuGC-UUGAGU-UCCGGu---AGCUGg -5'
18438 3' -54 NC_004681.1 + 64895 0.66 0.886366
Target:  5'- gCgGGAUGcAGCUCGugGGGCgAgaCGACCg -3'
miRNA:   3'- gGgCCUGC-UUGAGU--UCCGgUa-GCUGG- -5'
18438 3' -54 NC_004681.1 + 1178 0.66 0.871564
Target:  5'- cCCCGacCGAAucacCUCAAGGCCcUCGAa- -3'
miRNA:   3'- -GGGCcuGCUU----GAGUUCCGGuAGCUgg -5'
18438 3' -54 NC_004681.1 + 32340 0.66 0.871564
Target:  5'- gUCCGGGCuaGACaCGAGGCCG-CGcuGCCg -3'
miRNA:   3'- -GGGCCUGc-UUGaGUUCCGGUaGC--UGG- -5'
18438 3' -54 NC_004681.1 + 68187 0.66 0.871564
Target:  5'- cCCCaucGACG---UCAAGGCCAaCGACUc -3'
miRNA:   3'- -GGGc--CUGCuugAGUUCCGGUaGCUGG- -5'
18438 3' -54 NC_004681.1 + 38907 0.66 0.886366
Target:  5'- gCCCGGAUGGuCUCGGcGGaCUugcgcgCGGCCc -3'
miRNA:   3'- -GGGCCUGCUuGAGUU-CC-GGua----GCUGG- -5'
18438 3' -54 NC_004681.1 + 29677 0.66 0.900194
Target:  5'- uCUgGGGCGAACUaCAucuucacccuGGCguagGUCGACCg -3'
miRNA:   3'- -GGgCCUGCUUGA-GUu---------CCGg---UAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.