miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18438 3' -54 NC_004681.1 + 32258 1.14 0.001232
Target:  5'- gCCCGGACGAACUCAAGGCCAUCGACCu -3'
miRNA:   3'- -GGGCCUGCUUGAGUUCCGGUAGCUGG- -5'
18438 3' -54 NC_004681.1 + 52850 0.83 0.144176
Target:  5'- uUCCGGGCGGAaggcuGGCCAUCGGCCu -3'
miRNA:   3'- -GGGCCUGCUUgaguuCCGGUAGCUGG- -5'
18438 3' -54 NC_004681.1 + 25841 0.76 0.348999
Target:  5'- aUCCaGGACGGGCUCAucucgcuGGaagacaCCAUCGACCa -3'
miRNA:   3'- -GGG-CCUGCUUGAGUu------CC------GGUAGCUGG- -5'
18438 3' -54 NC_004681.1 + 9038 0.76 0.357163
Target:  5'- gCCGGuCGAACgcugCAgcAGGCCGUUGACg -3'
miRNA:   3'- gGGCCuGCUUGa---GU--UCCGGUAGCUGg -5'
18438 3' -54 NC_004681.1 + 32887 0.76 0.357163
Target:  5'- uCCUGGACGGACUCcuGGUacgagCGGCCc -3'
miRNA:   3'- -GGGCCUGCUUGAGuuCCGgua--GCUGG- -5'
18438 3' -54 NC_004681.1 + 18413 0.76 0.36546
Target:  5'- aCCGGACGAACcggAAGGCUGcUGACCg -3'
miRNA:   3'- gGGCCUGCUUGag-UUCCGGUaGCUGG- -5'
18438 3' -54 NC_004681.1 + 10315 0.75 0.391138
Target:  5'- aCCGGG-GAGC-CAGGGCCAggugUGGCCg -3'
miRNA:   3'- gGGCCUgCUUGaGUUCCGGUa---GCUGG- -5'
18438 3' -54 NC_004681.1 + 1081 0.75 0.406202
Target:  5'- cCCUGGcagcGCGAGCgccUCAAGGCCAUCuacgagcgccucaaGGCCa -3'
miRNA:   3'- -GGGCC----UGCUUG---AGUUCCGGUAG--------------CUGG- -5'
18438 3' -54 NC_004681.1 + 73165 0.75 0.43646
Target:  5'- gCCaGACGuGCgguagUGAGGCCAUUGACCa -3'
miRNA:   3'- gGGcCUGCuUGa----GUUCCGGUAGCUGG- -5'
18438 3' -54 NC_004681.1 + 52250 0.74 0.445882
Target:  5'- gCCGGugGcGACUCucuGGGCCG-CGACg -3'
miRNA:   3'- gGGCCugC-UUGAGu--UCCGGUaGCUGg -5'
18438 3' -54 NC_004681.1 + 55917 0.74 0.465061
Target:  5'- gCCGaGCGc-CUUGAGGUCAUCGACCg -3'
miRNA:   3'- gGGCcUGCuuGAGUUCCGGUAGCUGG- -5'
18438 3' -54 NC_004681.1 + 25044 0.74 0.465061
Target:  5'- aCUGGAUGAug-CGGGGCCGUCGAa- -3'
miRNA:   3'- gGGCCUGCUugaGUUCCGGUAGCUgg -5'
18438 3' -54 NC_004681.1 + 9960 0.74 0.474809
Target:  5'- uCCUGGGCGAAgUCucAGGUCAggguuacugCGGCCg -3'
miRNA:   3'- -GGGCCUGCUUgAGu-UCCGGUa--------GCUGG- -5'
18438 3' -54 NC_004681.1 + 48803 0.74 0.47481
Target:  5'- aCCgCGGGCG-ACUCGAaGCCGaacUCGGCCc -3'
miRNA:   3'- -GG-GCCUGCuUGAGUUcCGGU---AGCUGG- -5'
18438 3' -54 NC_004681.1 + 19445 0.74 0.48466
Target:  5'- aCCCGGuCGAACUCGucGGUC-UCGuCCu -3'
miRNA:   3'- -GGGCCuGCUUGAGUu-CCGGuAGCuGG- -5'
18438 3' -54 NC_004681.1 + 17083 0.73 0.494606
Target:  5'- gCCGGugGAuucuggGCUCAgauGGGCCAgaaGAUCg -3'
miRNA:   3'- gGGCCugCU------UGAGU---UCCGGUag-CUGG- -5'
18438 3' -54 NC_004681.1 + 32212 0.73 0.513754
Target:  5'- aCCUGGugGAGC---AGGCCAUCGcagcggcagcgcgGCCu -3'
miRNA:   3'- -GGGCCugCUUGaguUCCGGUAGC-------------UGG- -5'
18438 3' -54 NC_004681.1 + 1299 0.73 0.51477
Target:  5'- uCUgGGACGAGCU---GGCCGaCGACCu -3'
miRNA:   3'- -GGgCCUGCUUGAguuCCGGUaGCUGG- -5'
18438 3' -54 NC_004681.1 + 18332 0.73 0.529082
Target:  5'- gUCCGGuggcggugGCGGGCUCGGGuucacccccgguggcGCCAUCGACa -3'
miRNA:   3'- -GGGCC--------UGCUUGAGUUC---------------CGGUAGCUGg -5'
18438 3' -54 NC_004681.1 + 12186 0.73 0.535261
Target:  5'- gCgCGGGCGGAC-CucGGCCAcguacUCGGCCu -3'
miRNA:   3'- -GgGCCUGCUUGaGuuCCGGU-----AGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.