Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18438 | 3' | -54 | NC_004681.1 | + | 20772 | 0.72 | 0.566503 |
Target: 5'- uCCCGGucacuauCGAAaUCGGGGCCAUgCGAUg -3' miRNA: 3'- -GGGCCu------GCUUgAGUUCCGGUA-GCUGg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 579 | 0.72 | 0.577026 |
Target: 5'- cCCCaGGCGAGuuccUUCAGGgcGCCAUCGACg -3' miRNA: 3'- -GGGcCUGCUU----GAGUUC--CGGUAGCUGg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 44473 | 0.72 | 0.577026 |
Target: 5'- gCCCGGACGGGCgcccgUAGGGUCAggucUCGGg- -3' miRNA: 3'- -GGGCCUGCUUGa----GUUCCGGU----AGCUgg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 1989 | 0.72 | 0.593949 |
Target: 5'- gUCCGGGCGAuugGCUCcagcacccauccGGCCG-CGGCCa -3' miRNA: 3'- -GGGCCUGCU---UGAGuu----------CCGGUaGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 4553 | 0.72 | 0.598193 |
Target: 5'- cUCCggGGACGAACUCcuuGGCgAagCGACCg -3' miRNA: 3'- -GGG--CCUGCUUGAGuu-CCGgUa-GCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 13559 | 0.71 | 0.613077 |
Target: 5'- -aUGGGCGAAgagacguacgcgcgcUUCAAGGCCGcgggCGGCCa -3' miRNA: 3'- ggGCCUGCUU---------------GAGUUCCGGUa---GCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 49404 | 0.71 | 0.617337 |
Target: 5'- aCCgaGGACGAAgUCAAGGCCGacuggaaUCGggacugcACCg -3' miRNA: 3'- -GGg-CCUGCUUgAGUUCCGGU-------AGC-------UGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 8512 | 0.71 | 0.629058 |
Target: 5'- uCgCGGACGGugagaccGCcccCGcGGCCAUCGGCCa -3' miRNA: 3'- -GgGCCUGCU-------UGa--GUuCCGGUAGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 45193 | 0.71 | 0.630125 |
Target: 5'- cCCCGGucuUGAGCgagaccgCGgcgaGGGCC-UCGACCg -3' miRNA: 3'- -GGGCCu--GCUUGa------GU----UCCGGuAGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 37567 | 0.71 | 0.651435 |
Target: 5'- gUCCGGGguCGAGCUgu-GGUgAUCGGCCa -3' miRNA: 3'- -GGGCCU--GCUUGAguuCCGgUAGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 53159 | 0.7 | 0.662069 |
Target: 5'- aCCCGGccACGGACUUccucauGGCCG-CGACa -3' miRNA: 3'- -GGGCC--UGCUUGAGuu----CCGGUaGCUGg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 58824 | 0.7 | 0.662069 |
Target: 5'- aCCCGGACa-----GAGGCCAacaaccucuUCGACCc -3' miRNA: 3'- -GGGCCUGcuugagUUCCGGU---------AGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 59297 | 0.7 | 0.66207 |
Target: 5'- gCUGGACGAGCcgCccggGAGGCCGUCcguGACa -3' miRNA: 3'- gGGCCUGCUUGa-G----UUCCGGUAG---CUGg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 52881 | 0.7 | 0.672678 |
Target: 5'- cCCCGGcgACGAACacCGAGgugcuguccGCCAggUCGACCa -3' miRNA: 3'- -GGGCC--UGCUUGa-GUUC---------CGGU--AGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 7630 | 0.7 | 0.680084 |
Target: 5'- uCCCGGACuuggagucagucagGAACgUCGcgcgcacccAGGCCcaggcAUCGACCg -3' miRNA: 3'- -GGGCCUG--------------CUUG-AGU---------UCCGG-----UAGCUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 30719 | 0.7 | 0.682195 |
Target: 5'- uCCCacaugugGGGCGAGCUCGAcGGCaugcuCAUCGAguCCg -3' miRNA: 3'- -GGG-------CCUGCUUGAGUU-CCG-----GUAGCU--GG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 39472 | 0.7 | 0.683251 |
Target: 5'- uCCgCGGuGCGcuGGCUCAAGGCCggUGGCa -3' miRNA: 3'- -GG-GCC-UGC--UUGAGUUCCGGuaGCUGg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 41068 | 0.7 | 0.683251 |
Target: 5'- gCUCGG-CGAGgUCAAGGCCAU--GCUg -3' miRNA: 3'- -GGGCCuGCUUgAGUUCCGGUAgcUGG- -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 20088 | 0.7 | 0.693778 |
Target: 5'- gCCCGGACuGAccggcCUgGAGGUUGUCGGCg -3' miRNA: 3'- -GGGCCUG-CUu----GAgUUCCGGUAGCUGg -5' |
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18438 | 3' | -54 | NC_004681.1 | + | 61284 | 0.7 | 0.704249 |
Target: 5'- -gCGGAgGAAUguggCGucGCCGUCGACCc -3' miRNA: 3'- ggGCCUgCUUGa---GUucCGGUAGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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