miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18439 5' -56.1 NC_004681.1 + 68247 0.66 0.768866
Target:  5'- uCUCAUCGacuACGCCguGCGacguuucgcaccaacCCUGGCAgGUa -3'
miRNA:   3'- cGAGUAGU---UGCGG--UGC---------------GGACCGUgCA- -5'
18439 5' -56.1 NC_004681.1 + 52722 0.66 0.764897
Target:  5'- aGCUCAugUCGAuugcgguuuCGCUAcCGCCUGGCuGCa- -3'
miRNA:   3'- -CGAGU--AGUU---------GCGGU-GCGGACCG-UGca -5'
18439 5' -56.1 NC_004681.1 + 48574 0.66 0.764897
Target:  5'- uGCUgCAUCGugGgCCACGCCcucgcagaGGCAgGc -3'
miRNA:   3'- -CGA-GUAGUugC-GGUGCGGa-------CCGUgCa -5'
18439 5' -56.1 NC_004681.1 + 58030 0.66 0.761908
Target:  5'- gGCUCAagcagacggaggaaUCGGCGgCAUGagcaacgagaaCUGGCGCGUg -3'
miRNA:   3'- -CGAGU--------------AGUUGCgGUGCg----------GACCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 37128 0.66 0.754887
Target:  5'- cUUCAUCAgacACGCUccccggUGCUUGGCAUGUa -3'
miRNA:   3'- cGAGUAGU---UGCGGu-----GCGGACCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 39233 0.66 0.744758
Target:  5'- aGCUCAcCGuGCGCCGCGgCaagGGCGCc- -3'
miRNA:   3'- -CGAGUaGU-UGCGGUGCgGa--CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 52930 0.66 0.733491
Target:  5'- cGUUCAUCGACGUgcgcuucaucguCACcgacgugGCCUGGCAgGc -3'
miRNA:   3'- -CGAGUAGUUGCG------------GUG-------CGGACCGUgCa -5'
18439 5' -56.1 NC_004681.1 + 12735 0.66 0.724184
Target:  5'- cGC-CGUCAGC-CCACGUCUugGGCGUGUa -3'
miRNA:   3'- -CGaGUAGUUGcGGUGCGGA--CCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 7382 0.66 0.724184
Target:  5'- aGCUCGUCGcAgGCgGCGCaCUcGGCGCc- -3'
miRNA:   3'- -CGAGUAGU-UgCGgUGCG-GA-CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 40581 0.66 0.724184
Target:  5'- uGCUaCAUCGugGCgGCGUC-GGcCGCGg -3'
miRNA:   3'- -CGA-GUAGUugCGgUGCGGaCC-GUGCa -5'
18439 5' -56.1 NC_004681.1 + 35660 0.67 0.71376
Target:  5'- aGgUgAUCGAUGCgCACGCCUacaacGGCGCa- -3'
miRNA:   3'- -CgAgUAGUUGCG-GUGCGGA-----CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 19711 0.67 0.70326
Target:  5'- cGC-CGUCAuCGaCCACGCCgcaGCGCGc -3'
miRNA:   3'- -CGaGUAGUuGC-GGUGCGGac-CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 23574 0.67 0.702206
Target:  5'- uGUUCGUCAGCcacgaggGCUACGag-GGCACGg -3'
miRNA:   3'- -CGAGUAGUUG-------CGGUGCggaCCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 16485 0.67 0.671403
Target:  5'- aCUacUCGGCGCCGCGCCccGGCAa-- -3'
miRNA:   3'- cGAguAGUUGCGGUGCGGa-CCGUgca -5'
18439 5' -56.1 NC_004681.1 + 31197 0.67 0.664985
Target:  5'- cGCUggCAUCAACGCCgcuuucgaggacaucGCaGCgUGGCugGg -3'
miRNA:   3'- -CGA--GUAGUUGCGG---------------UG-CGgACCGugCa -5'
18439 5' -56.1 NC_004681.1 + 60031 0.67 0.6607
Target:  5'- uGCUCGccuUCGGCGgcucCCGCaCCUGGCACc- -3'
miRNA:   3'- -CGAGU---AGUUGC----GGUGcGGACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 6471 0.68 0.639228
Target:  5'- cCUCGaCAGCGCCAUcggGCgUGGCGCc- -3'
miRNA:   3'- cGAGUaGUUGCGGUG---CGgACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 66296 0.68 0.639228
Target:  5'- aGUUCGgguccuugCAGCGCCACaUCUGGUACa- -3'
miRNA:   3'- -CGAGUa-------GUUGCGGUGcGGACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 61312 0.68 0.639228
Target:  5'- uCUCggCGGCGUCGCGCCagaUGGUGCa- -3'
miRNA:   3'- cGAGuaGUUGCGGUGCGG---ACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 26456 0.68 0.639228
Target:  5'- cGC-CAgaguaCGGCuacgGCCugGCCUGGUACGa -3'
miRNA:   3'- -CGaGUa----GUUG----CGGugCGGACCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.