miRNA display CGI


Results 41 - 44 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18439 5' -56.1 NC_004681.1 + 58030 0.66 0.761908
Target:  5'- gGCUCAagcagacggaggaaUCGGCGgCAUGagcaacgagaaCUGGCGCGUg -3'
miRNA:   3'- -CGAGU--------------AGUUGCgGUGCg----------GACCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 52722 0.66 0.764897
Target:  5'- aGCUCAugUCGAuugcgguuuCGCUAcCGCCUGGCuGCa- -3'
miRNA:   3'- -CGAGU--AGUU---------GCGGU-GCGGACCG-UGca -5'
18439 5' -56.1 NC_004681.1 + 48574 0.66 0.764897
Target:  5'- uGCUgCAUCGugGgCCACGCCcucgcagaGGCAgGc -3'
miRNA:   3'- -CGA-GUAGUugC-GGUGCGGa-------CCGUgCa -5'
18439 5' -56.1 NC_004681.1 + 68247 0.66 0.768866
Target:  5'- uCUCAUCGacuACGCCguGCGacguuucgcaccaacCCUGGCAgGUa -3'
miRNA:   3'- cGAGUAGU---UGCGG--UGC---------------GGACCGUgCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.