miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18439 5' -56.1 NC_004681.1 + 6355 0.7 0.522524
Target:  5'- cGCUgCAgcccuUgGGCGCCACGCCcgaUGGCGCu- -3'
miRNA:   3'- -CGA-GU-----AgUUGCGGUGCGG---ACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 6471 0.68 0.639228
Target:  5'- cCUCGaCAGCGCCAUcggGCgUGGCGCc- -3'
miRNA:   3'- cGAGUaGUUGCGGUG---CGgACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 7382 0.66 0.724184
Target:  5'- aGCUCGUCGcAgGCgGCGCaCUcGGCGCc- -3'
miRNA:   3'- -CGAGUAGU-UgCGgUGCG-GA-CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 7494 0.72 0.424153
Target:  5'- cGCUCcgGUCGAUGCCugGgCCUgGGUGCGc -3'
miRNA:   3'- -CGAG--UAGUUGCGGugC-GGA-CCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 8401 0.74 0.306913
Target:  5'- aGCUCAagAACGCCACGUCguucgagaagGGCACc- -3'
miRNA:   3'- -CGAGUagUUGCGGUGCGGa---------CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 10287 0.69 0.553794
Target:  5'- aGCUgAUCGACGUCGCcauucGCCUcGCGCGc -3'
miRNA:   3'- -CGAgUAGUUGCGGUG-----CGGAcCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 10433 0.69 0.574948
Target:  5'- cGCUaCGUCAuCGCCAC-CCUGGCu--- -3'
miRNA:   3'- -CGA-GUAGUuGCGGUGcGGACCGugca -5'
18439 5' -56.1 NC_004681.1 + 12735 0.66 0.724184
Target:  5'- cGC-CGUCAGC-CCACGUCUugGGCGUGUa -3'
miRNA:   3'- -CGaGUAGUUGcGGUGCGGA--CCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 14417 0.72 0.405825
Target:  5'- aGCUCAUUGGC-CCGCGCCUcGGCGa-- -3'
miRNA:   3'- -CGAGUAGUUGcGGUGCGGA-CCGUgca -5'
18439 5' -56.1 NC_004681.1 + 16485 0.67 0.671403
Target:  5'- aCUacUCGGCGCCGCGCCccGGCAa-- -3'
miRNA:   3'- cGAguAGUUGCGGUGCGGa-CCGUgca -5'
18439 5' -56.1 NC_004681.1 + 17462 0.75 0.251867
Target:  5'- gGCUCAccgaUCAugGCUucgUGCCUGGCAUGg -3'
miRNA:   3'- -CGAGU----AGUugCGGu--GCGGACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 19711 0.67 0.70326
Target:  5'- cGC-CGUCAuCGaCCACGCCgcaGCGCGc -3'
miRNA:   3'- -CGaGUAGUuGC-GGUGCGGac-CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 21178 0.68 0.606996
Target:  5'- cGCUCAUCAGCGCgGUGCCgaaccaGGCuuGc -3'
miRNA:   3'- -CGAGUAGUUGCGgUGCGGa-----CCGugCa -5'
18439 5' -56.1 NC_004681.1 + 23574 0.67 0.702206
Target:  5'- uGUUCGUCAGCcacgaggGCUACGag-GGCACGg -3'
miRNA:   3'- -CGAGUAGUUG-------CGGUGCggaCCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 26456 0.68 0.639228
Target:  5'- cGC-CAgaguaCGGCuacgGCCugGCCUGGUACGa -3'
miRNA:   3'- -CGaGUa----GUUG----CGGugCGGACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 28773 0.68 0.639228
Target:  5'- --aCGUCAGCGCC-CGCg-GGUGCGUu -3'
miRNA:   3'- cgaGUAGUUGCGGuGCGgaCCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 29238 0.7 0.532877
Target:  5'- gGC-CGUUGAgguCGCCACGCCUGaCGCGg -3'
miRNA:   3'- -CGaGUAGUU---GCGGUGCGGACcGUGCa -5'
18439 5' -56.1 NC_004681.1 + 29820 0.7 0.532877
Target:  5'- aGCUCGgcaucCAACGCgGCGCgcuugccccugUUGGCGCGa -3'
miRNA:   3'- -CGAGUa----GUUGCGgUGCG-----------GACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 31197 0.67 0.664985
Target:  5'- cGCUggCAUCAACGCCgcuuucgaggacaucGCaGCgUGGCugGg -3'
miRNA:   3'- -CGA--GUAGUUGCGG---------------UG-CGgACCGugCa -5'
18439 5' -56.1 NC_004681.1 + 32008 0.73 0.337713
Target:  5'- cGCUgAUCGGCGCCGCGggugucGGCACGg -3'
miRNA:   3'- -CGAgUAGUUGCGGUGCgga---CCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.