miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18439 5' -56.1 NC_004681.1 + 32833 1.08 0.001302
Target:  5'- gGCUCAUCAACGCCACGCCUGGCACGUu -3'
miRNA:   3'- -CGAGUAGUUGCGGUGCGGACCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 33290 0.7 0.522524
Target:  5'- -gUCAUCGACGCCggucGCGCCgcgGuGUACGc -3'
miRNA:   3'- cgAGUAGUUGCGG----UGCGGa--C-CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 33614 0.68 0.639228
Target:  5'- --aCAUCAACGCCAagguCGCCgaccuggaGGCGCa- -3'
miRNA:   3'- cgaGUAGUUGCGGU----GCGGa-------CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 35660 0.67 0.71376
Target:  5'- aGgUgAUCGAUGCgCACGCCUacaacGGCGCa- -3'
miRNA:   3'- -CgAgUAGUUGCG-GUGCGGA-----CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 37128 0.66 0.754887
Target:  5'- cUUCAUCAgacACGCUccccggUGCUUGGCAUGUa -3'
miRNA:   3'- cGAGUAGU---UGCGGu-----GCGGACCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 39233 0.66 0.744758
Target:  5'- aGCUCAcCGuGCGCCGCGgCaagGGCGCc- -3'
miRNA:   3'- -CGAGUaGU-UGCGGUGCgGa--CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 39317 0.68 0.628478
Target:  5'- uGCgcgCG-CGGCGCCGCGC-UGGaCACGg -3'
miRNA:   3'- -CGa--GUaGUUGCGGUGCGgACC-GUGCa -5'
18439 5' -56.1 NC_004681.1 + 40581 0.66 0.724184
Target:  5'- uGCUaCAUCGugGCgGCGUC-GGcCGCGg -3'
miRNA:   3'- -CGA-GUAGUugCGgUGCGGaCC-GUGCa -5'
18439 5' -56.1 NC_004681.1 + 42425 0.69 0.553794
Target:  5'- uCUCGUCGGCGCgCA-GCCUG-CACGa -3'
miRNA:   3'- cGAGUAGUUGCG-GUgCGGACcGUGCa -5'
18439 5' -56.1 NC_004681.1 + 44576 0.68 0.617731
Target:  5'- cCUCAUCGcCGCCGCGCUcgcGGC-CGc -3'
miRNA:   3'- cGAGUAGUuGCGGUGCGGa--CCGuGCa -5'
18439 5' -56.1 NC_004681.1 + 48574 0.66 0.764897
Target:  5'- uGCUgCAUCGugGgCCACGCCcucgcagaGGCAgGc -3'
miRNA:   3'- -CGA-GUAGUugC-GGUGCGGa-------CCGUgCa -5'
18439 5' -56.1 NC_004681.1 + 51096 0.71 0.442968
Target:  5'- aGCUCcccgacGUCGACGCCgguguuccauugACGCUUGGCGuCGg -3'
miRNA:   3'- -CGAG------UAGUUGCGG------------UGCGGACCGU-GCa -5'
18439 5' -56.1 NC_004681.1 + 51733 0.7 0.512249
Target:  5'- uGgUCGUCGGCgGCCGC-CCcGGCGCGg -3'
miRNA:   3'- -CgAGUAGUUG-CGGUGcGGaCCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 52722 0.66 0.764897
Target:  5'- aGCUCAugUCGAuugcgguuuCGCUAcCGCCUGGCuGCa- -3'
miRNA:   3'- -CGAGU--AGUU---------GCGGU-GCGGACCG-UGca -5'
18439 5' -56.1 NC_004681.1 + 52930 0.66 0.733491
Target:  5'- cGUUCAUCGACGUgcgcuucaucguCACcgacgugGCCUGGCAgGc -3'
miRNA:   3'- -CGAGUAGUUGCG------------GUG-------CGGACCGUgCa -5'
18439 5' -56.1 NC_004681.1 + 53092 0.78 0.184818
Target:  5'- cGCUaCAUCGACGUCACuGCCUGGgAUGa -3'
miRNA:   3'- -CGA-GUAGUUGCGGUG-CGGACCgUGCa -5'
18439 5' -56.1 NC_004681.1 + 57895 0.7 0.522524
Target:  5'- cCUCggCGGCGCgGCGCgUGGuCGCGg -3'
miRNA:   3'- cGAGuaGUUGCGgUGCGgACC-GUGCa -5'
18439 5' -56.1 NC_004681.1 + 58030 0.66 0.761908
Target:  5'- gGCUCAagcagacggaggaaUCGGCGgCAUGagcaacgagaaCUGGCGCGUg -3'
miRNA:   3'- -CGAGU--------------AGUUGCgGUGCg----------GACCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 60031 0.67 0.6607
Target:  5'- uGCUCGccuUCGGCGgcucCCGCaCCUGGCACc- -3'
miRNA:   3'- -CGAGU---AGUUGC----GGUGcGGACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 61312 0.68 0.639228
Target:  5'- uCUCggCGGCGUCGCGCCagaUGGUGCa- -3'
miRNA:   3'- cGAGuaGUUGCGGUGCGG---ACCGUGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.