miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18439 5' -56.1 NC_004681.1 + 16485 0.67 0.671403
Target:  5'- aCUacUCGGCGCCGCGCCccGGCAa-- -3'
miRNA:   3'- cGAguAGUUGCGGUGCGGa-CCGUgca -5'
18439 5' -56.1 NC_004681.1 + 42425 0.69 0.553794
Target:  5'- uCUCGUCGGCGCgCA-GCCUG-CACGa -3'
miRNA:   3'- cGAGUAGUUGCG-GUgCGGACcGUGCa -5'
18439 5' -56.1 NC_004681.1 + 10433 0.69 0.574948
Target:  5'- cGCUaCGUCAuCGCCAC-CCUGGCu--- -3'
miRNA:   3'- -CGA-GUAGUuGCGGUGcGGACCGugca -5'
18439 5' -56.1 NC_004681.1 + 44576 0.68 0.617731
Target:  5'- cCUCAUCGcCGCCGCGCUcgcGGC-CGc -3'
miRNA:   3'- cGAGUAGUuGCGGUGCGGa--CCGuGCa -5'
18439 5' -56.1 NC_004681.1 + 39317 0.68 0.628478
Target:  5'- uGCgcgCG-CGGCGCCGCGC-UGGaCACGg -3'
miRNA:   3'- -CGa--GUaGUUGCGGUGCGgACC-GUGCa -5'
18439 5' -56.1 NC_004681.1 + 33614 0.68 0.639228
Target:  5'- --aCAUCAACGCCAagguCGCCgaccuggaGGCGCa- -3'
miRNA:   3'- cgaGUAGUUGCGGU----GCGGa-------CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 26456 0.68 0.639228
Target:  5'- cGC-CAgaguaCGGCuacgGCCugGCCUGGUACGa -3'
miRNA:   3'- -CGaGUa----GUUG----CGGugCGGACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 60031 0.67 0.6607
Target:  5'- uGCUCGccuUCGGCGgcucCCGCaCCUGGCACc- -3'
miRNA:   3'- -CGAGU---AGUUGC----GGUGcGGACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 31197 0.67 0.664985
Target:  5'- cGCUggCAUCAACGCCgcuuucgaggacaucGCaGCgUGGCugGg -3'
miRNA:   3'- -CGA--GUAGUUGCGG---------------UG-CGgACCGugCa -5'
18439 5' -56.1 NC_004681.1 + 10287 0.69 0.553794
Target:  5'- aGCUgAUCGACGUCGCcauucGCCUcGCGCGc -3'
miRNA:   3'- -CGAgUAGUUGCGGUG-----CGGAcCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 64912 0.69 0.543302
Target:  5'- uCUCccgCGGCGCC-CGCCUGgaGCACGa -3'
miRNA:   3'- cGAGua-GUUGCGGuGCGGAC--CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 29820 0.7 0.532877
Target:  5'- aGCUCGgcaucCAACGCgGCGCgcuugccccugUUGGCGCGa -3'
miRNA:   3'- -CGAGUa----GUUGCGgUGCG-----------GACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 53092 0.78 0.184818
Target:  5'- cGCUaCAUCGACGUCACuGCCUGGgAUGa -3'
miRNA:   3'- -CGA-GUAGUUGCGGUG-CGGACCgUGCa -5'
18439 5' -56.1 NC_004681.1 + 17462 0.75 0.251867
Target:  5'- gGCUCAccgaUCAugGCUucgUGCCUGGCAUGg -3'
miRNA:   3'- -CGAGU----AGUugCGGu--GCGGACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 8401 0.74 0.306913
Target:  5'- aGCUCAagAACGCCACGUCguucgagaagGGCACc- -3'
miRNA:   3'- -CGAGUagUUGCGGUGCGGa---------CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 32008 0.73 0.337713
Target:  5'- cGCUgAUCGGCGCCGCGggugucGGCACGg -3'
miRNA:   3'- -CGAgUAGUUGCGGUGCgga---CCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 7494 0.72 0.424153
Target:  5'- cGCUCcgGUCGAUGCCugGgCCUgGGUGCGc -3'
miRNA:   3'- -CGAG--UAGUUGCGGugC-GGA-CCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 51733 0.7 0.512249
Target:  5'- uGgUCGUCGGCgGCCGC-CCcGGCGCGg -3'
miRNA:   3'- -CgAGUAGUUG-CGGUGcGGaCCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 6355 0.7 0.522524
Target:  5'- cGCUgCAgcccuUgGGCGCCACGCCcgaUGGCGCu- -3'
miRNA:   3'- -CGA-GU-----AgUUGCGGUGCGG---ACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 33290 0.7 0.522524
Target:  5'- -gUCAUCGACGCCggucGCGCCgcgGuGUACGc -3'
miRNA:   3'- cgAGUAGUUGCGG----UGCGGa--C-CGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.