miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18439 5' -56.1 NC_004681.1 + 7494 0.72 0.424153
Target:  5'- cGCUCcgGUCGAUGCCugGgCCUgGGUGCGc -3'
miRNA:   3'- -CGAG--UAGUUGCGGugC-GGA-CCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 51733 0.7 0.512249
Target:  5'- uGgUCGUCGGCgGCCGC-CCcGGCGCGg -3'
miRNA:   3'- -CgAGUAGUUG-CGGUGcGGaCCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 6355 0.7 0.522524
Target:  5'- cGCUgCAgcccuUgGGCGCCACGCCcgaUGGCGCu- -3'
miRNA:   3'- -CGA-GU-----AgUUGCGGUGCGG---ACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 33290 0.7 0.522524
Target:  5'- -gUCAUCGACGCCggucGCGCCgcgGuGUACGc -3'
miRNA:   3'- cgAGUAGUUGCGG----UGCGGa--C-CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 29820 0.7 0.532877
Target:  5'- aGCUCGgcaucCAACGCgGCGCgcuugccccugUUGGCGCGa -3'
miRNA:   3'- -CGAGUa----GUUGCGgUGCG-----------GACCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 64912 0.69 0.543302
Target:  5'- uCUCccgCGGCGCC-CGCCUGgaGCACGa -3'
miRNA:   3'- cGAGua-GUUGCGGuGCGGAC--CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 10287 0.69 0.553794
Target:  5'- aGCUgAUCGACGUCGCcauucGCCUcGCGCGc -3'
miRNA:   3'- -CGAgUAGUUGCGGUG-----CGGAcCGUGCa -5'
18439 5' -56.1 NC_004681.1 + 42425 0.69 0.553794
Target:  5'- uCUCGUCGGCGCgCA-GCCUG-CACGa -3'
miRNA:   3'- cGAGUAGUUGCG-GUgCGGACcGUGCa -5'
18439 5' -56.1 NC_004681.1 + 61312 0.68 0.639228
Target:  5'- uCUCggCGGCGUCGCGCCagaUGGUGCa- -3'
miRNA:   3'- cGAGuaGUUGCGGUGCGG---ACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 28773 0.68 0.639228
Target:  5'- --aCGUCAGCGCC-CGCg-GGUGCGUu -3'
miRNA:   3'- cgaGUAGUUGCGGuGCGgaCCGUGCA- -5'
18439 5' -56.1 NC_004681.1 + 6471 0.68 0.639228
Target:  5'- cCUCGaCAGCGCCAUcggGCgUGGCGCc- -3'
miRNA:   3'- cGAGUaGUUGCGGUG---CGgACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 19711 0.67 0.70326
Target:  5'- cGC-CGUCAuCGaCCACGCCgcaGCGCGc -3'
miRNA:   3'- -CGaGUAGUuGC-GGUGCGGac-CGUGCa -5'
18439 5' -56.1 NC_004681.1 + 35660 0.67 0.71376
Target:  5'- aGgUgAUCGAUGCgCACGCCUacaacGGCGCa- -3'
miRNA:   3'- -CgAgUAGUUGCG-GUGCGGA-----CCGUGca -5'
18439 5' -56.1 NC_004681.1 + 66296 0.68 0.639228
Target:  5'- aGUUCGgguccuugCAGCGCCACaUCUGGUACa- -3'
miRNA:   3'- -CGAGUa-------GUUGCGGUGcGGACCGUGca -5'
18439 5' -56.1 NC_004681.1 + 21178 0.68 0.606996
Target:  5'- cGCUCAUCAGCGCgGUGCCgaaccaGGCuuGc -3'
miRNA:   3'- -CGAGUAGUUGCGgUGCGGa-----CCGugCa -5'
18439 5' -56.1 NC_004681.1 + 65721 0.7 0.532877
Target:  5'- cCUUGUCcuCGCCACGCCacuUGGCgGCGa -3'
miRNA:   3'- cGAGUAGuuGCGGUGCGG---ACCG-UGCa -5'
18439 5' -56.1 NC_004681.1 + 29238 0.7 0.532877
Target:  5'- gGC-CGUUGAgguCGCCACGCCUGaCGCGg -3'
miRNA:   3'- -CGaGUAGUU---GCGGUGCGGACcGUGCa -5'
18439 5' -56.1 NC_004681.1 + 57895 0.7 0.522524
Target:  5'- cCUCggCGGCGCgGCGCgUGGuCGCGg -3'
miRNA:   3'- cGAGuaGUUGCGgUGCGgACC-GUGCa -5'
18439 5' -56.1 NC_004681.1 + 51096 0.71 0.442968
Target:  5'- aGCUCcccgacGUCGACGCCgguguuccauugACGCUUGGCGuCGg -3'
miRNA:   3'- -CGAG------UAGUUGCGG------------UGCGGACCGU-GCa -5'
18439 5' -56.1 NC_004681.1 + 52722 0.66 0.764897
Target:  5'- aGCUCAugUCGAuugcgguuuCGCUAcCGCCUGGCuGCa- -3'
miRNA:   3'- -CGAGU--AGUU---------GCGGU-GCGGACCG-UGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.