Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18439 | 5' | -56.1 | NC_004681.1 | + | 14417 | 0.72 | 0.405825 |
Target: 5'- aGCUCAUUGGC-CCGCGCCUcGGCGa-- -3' miRNA: 3'- -CGAGUAGUUGcGGUGCGGA-CCGUgca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 35660 | 0.67 | 0.71376 |
Target: 5'- aGgUgAUCGAUGCgCACGCCUacaacGGCGCa- -3' miRNA: 3'- -CgAgUAGUUGCG-GUGCGGA-----CCGUGca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 28773 | 0.68 | 0.639228 |
Target: 5'- --aCGUCAGCGCC-CGCg-GGUGCGUu -3' miRNA: 3'- cgaGUAGUUGCGGuGCGgaCCGUGCA- -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 61312 | 0.68 | 0.639228 |
Target: 5'- uCUCggCGGCGUCGCGCCagaUGGUGCa- -3' miRNA: 3'- cGAGuaGUUGCGGUGCGG---ACCGUGca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 21178 | 0.68 | 0.606996 |
Target: 5'- cGCUCAUCAGCGCgGUGCCgaaccaGGCuuGc -3' miRNA: 3'- -CGAGUAGUUGCGgUGCGGa-----CCGugCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 65721 | 0.7 | 0.532877 |
Target: 5'- cCUUGUCcuCGCCACGCCacuUGGCgGCGa -3' miRNA: 3'- cGAGUAGuuGCGGUGCGG---ACCG-UGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 40581 | 0.66 | 0.724184 |
Target: 5'- uGCUaCAUCGugGCgGCGUC-GGcCGCGg -3' miRNA: 3'- -CGA-GUAGUugCGgUGCGGaCC-GUGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 19711 | 0.67 | 0.70326 |
Target: 5'- cGC-CGUCAuCGaCCACGCCgcaGCGCGc -3' miRNA: 3'- -CGaGUAGUuGC-GGUGCGGac-CGUGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 66296 | 0.68 | 0.639228 |
Target: 5'- aGUUCGgguccuugCAGCGCCACaUCUGGUACa- -3' miRNA: 3'- -CGAGUa-------GUUGCGGUGcGGACCGUGca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 29238 | 0.7 | 0.532877 |
Target: 5'- gGC-CGUUGAgguCGCCACGCCUGaCGCGg -3' miRNA: 3'- -CGaGUAGUU---GCGGUGCGGACcGUGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 51096 | 0.71 | 0.442968 |
Target: 5'- aGCUCcccgacGUCGACGCCgguguuccauugACGCUUGGCGuCGg -3' miRNA: 3'- -CGAG------UAGUUGCGG------------UGCGGACCGU-GCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 7382 | 0.66 | 0.724184 |
Target: 5'- aGCUCGUCGcAgGCgGCGCaCUcGGCGCc- -3' miRNA: 3'- -CGAGUAGU-UgCGgUGCG-GA-CCGUGca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 57895 | 0.7 | 0.522524 |
Target: 5'- cCUCggCGGCGCgGCGCgUGGuCGCGg -3' miRNA: 3'- cGAGuaGUUGCGgUGCGgACC-GUGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 6471 | 0.68 | 0.639228 |
Target: 5'- cCUCGaCAGCGCCAUcggGCgUGGCGCc- -3' miRNA: 3'- cGAGUaGUUGCGGUG---CGgACCGUGca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 52722 | 0.66 | 0.764897 |
Target: 5'- aGCUCAugUCGAuugcgguuuCGCUAcCGCCUGGCuGCa- -3' miRNA: 3'- -CGAGU--AGUU---------GCGGU-GCGGACCG-UGca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 12735 | 0.66 | 0.724184 |
Target: 5'- cGC-CGUCAGC-CCACGUCUugGGCGUGUa -3' miRNA: 3'- -CGaGUAGUUGcGGUGCGGA--CCGUGCA- -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 44576 | 0.68 | 0.617731 |
Target: 5'- cCUCAUCGcCGCCGCGCUcgcGGC-CGc -3' miRNA: 3'- cGAGUAGUuGCGGUGCGGa--CCGuGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 10433 | 0.69 | 0.574948 |
Target: 5'- cGCUaCGUCAuCGCCAC-CCUGGCu--- -3' miRNA: 3'- -CGA-GUAGUuGCGGUGcGGACCGugca -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 42425 | 0.69 | 0.553794 |
Target: 5'- uCUCGUCGGCGCgCA-GCCUG-CACGa -3' miRNA: 3'- cGAGUAGUUGCG-GUgCGGACcGUGCa -5' |
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18439 | 5' | -56.1 | NC_004681.1 | + | 10287 | 0.69 | 0.553794 |
Target: 5'- aGCUgAUCGACGUCGCcauucGCCUcGCGCGc -3' miRNA: 3'- -CGAgUAGUUGCGGUG-----CGGAcCGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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