miRNA: 3'- -CGa--GUaGUUGCGGUGCGgACC-GUGCa -5'
miRNA: 3'- cGAGUAGUuGCGGUGCGGa--CCGuGCa -5'
miRNA: 3'- -CGA-GUAGUuGCGGUGcGGACCGugca -5'
miRNA: 3'- -CGAGUAGUUGCGGUGCGGACCGUGCA- -5'
Results 41 - 44 of 44 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18439 | 5' | -56.1 | NC_004681.1 | + | 39317 | 0.68 | 0.628478 |
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Target: 5'- uGCgcgCG-CGGCGCCGCGC-UGGaCACGg -3' miRNA: 3'- -CGa--GUaGUUGCGGUGCGgACC-GUGCa -5' |
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| 18439 | 5' | -56.1 | NC_004681.1 | + | 44576 | 0.68 | 0.617731 |
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Target: 5'- cCUCAUCGcCGCCGCGCUcgcGGC-CGc -3' miRNA: 3'- cGAGUAGUuGCGGUGCGGa--CCGuGCa -5' |
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| 18439 | 5' | -56.1 | NC_004681.1 | + | 10433 | 0.69 | 0.574948 |
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Target: 5'- cGCUaCGUCAuCGCCAC-CCUGGCu--- -3' miRNA: 3'- -CGA-GUAGUuGCGGUGcGGACCGugca -5' |
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| 18439 | 5' | -56.1 | NC_004681.1 | + | 32833 | 1.08 | 0.001302 |
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Target: 5'- gGCUCAUCAACGCCACGCCUGGCACGUu -3' miRNA: 3'- -CGAGUAGUUGCGGUGCGGACCGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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