miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18440 5' -48.3 NC_004681.1 + 54984 0.66 0.984922
Target:  5'- cGUGGACAUGU----GGCGC-AAGCu- -3'
miRNA:   3'- -CACUUGUACAaguuCCGCGaUUCGuu -5'
18440 5' -48.3 NC_004681.1 + 21416 0.66 0.984922
Target:  5'- -aGAGCGuccUGggCAAGGUGCU-GGCGc -3'
miRNA:   3'- caCUUGU---ACaaGUUCCGCGAuUCGUu -5'
18440 5' -48.3 NC_004681.1 + 70946 0.66 0.980497
Target:  5'- cUGAgGCAUGcUCGcGGcCGCUGAGCGu -3'
miRNA:   3'- cACU-UGUACaAGUuCC-GCGAUUCGUu -5'
18440 5' -48.3 NC_004681.1 + 51525 0.66 0.977952
Target:  5'- -cGAugGUGgcguacgUCGuGGCGUUGAGCGc -3'
miRNA:   3'- caCUugUACa------AGUuCCGCGAUUCGUu -5'
18440 5' -48.3 NC_004681.1 + 5457 0.66 0.977952
Target:  5'- gGUGAACAUGcacUUCAccgggAGGCGUgccAGCGc -3'
miRNA:   3'- -CACUUGUAC---AAGU-----UCCGCGau-UCGUu -5'
18440 5' -48.3 NC_004681.1 + 14287 0.66 0.975169
Target:  5'- ---cGCAUGcgCAAGGCGCaGGGUGAg -3'
miRNA:   3'- cacuUGUACaaGUUCCGCGaUUCGUU- -5'
18440 5' -48.3 NC_004681.1 + 5956 0.67 0.961464
Target:  5'- -cGAAC-UGUUCGcgcAGGCGCUgcuGAGCc- -3'
miRNA:   3'- caCUUGuACAAGU---UCCGCGA---UUCGuu -5'
18440 5' -48.3 NC_004681.1 + 8895 0.68 0.948243
Target:  5'- -cGGugAUGgUCAGGGCGUU-GGCGAc -3'
miRNA:   3'- caCUugUACaAGUUCCGCGAuUCGUU- -5'
18440 5' -48.3 NC_004681.1 + 46720 0.69 0.90677
Target:  5'- aGUGGGCGUGUgCGGGGCGggGuccucGGCGAg -3'
miRNA:   3'- -CACUUGUACAaGUUCCGCgaU-----UCGUU- -5'
18440 5' -48.3 NC_004681.1 + 46206 0.72 0.770346
Target:  5'- uUGAuCAUGUcgUCAAGGCGCUuguugagGAGCGc -3'
miRNA:   3'- cACUuGUACA--AGUUCCGCGA-------UUCGUu -5'
18440 5' -48.3 NC_004681.1 + 33297 0.73 0.727558
Target:  5'- uUGAACAUGUUCAcGGCcagGCcGAGCAu -3'
miRNA:   3'- cACUUGUACAAGUuCCG---CGaUUCGUu -5'
18440 5' -48.3 NC_004681.1 + 33208 1.07 0.007681
Target:  5'- cGUGAACAUGUUCAAGGCGCUAAGCAAc -3'
miRNA:   3'- -CACUUGUACAAGUUCCGCGAUUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.