miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18441 3' -54.9 NC_004681.1 + 23933 0.66 0.827884
Target:  5'- aCGCugcgCGGCGCCGGaucGGCGU--GCUCa -3'
miRNA:   3'- -GCGua--GCCGCGGUU---CUGUAacCGAGc -5'
18441 3' -54.9 NC_004681.1 + 27868 0.66 0.827884
Target:  5'- cCGCGaaCGGUGgC-GGACA-UGGCUCGg -3'
miRNA:   3'- -GCGUa-GCCGCgGuUCUGUaACCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 68343 0.66 0.827884
Target:  5'- uCGCA-CGGCGUagucgauGAGACcgUGGCggCGu -3'
miRNA:   3'- -GCGUaGCCGCGg------UUCUGuaACCGa-GC- -5'
18441 3' -54.9 NC_004681.1 + 64243 0.66 0.827884
Target:  5'- aGCGUUGuGCGCCAcAGGCAUUGcaGUUUu -3'
miRNA:   3'- gCGUAGC-CGCGGU-UCUGUAAC--CGAGc -5'
18441 3' -54.9 NC_004681.1 + 27184 0.66 0.818885
Target:  5'- uGCGaguggaCGGUGCCAAGACcggaGUUGGUUg- -3'
miRNA:   3'- gCGUa-----GCCGCGGUUCUG----UAACCGAgc -5'
18441 3' -54.9 NC_004681.1 + 17819 0.66 0.809697
Target:  5'- aCGCggCGGcCGCgCAAGGCAccGGcCUCa -3'
miRNA:   3'- -GCGuaGCC-GCG-GUUCUGUaaCC-GAGc -5'
18441 3' -54.9 NC_004681.1 + 17488 0.66 0.800329
Target:  5'- gGCAUgGGCgGCCucgGAGACuuccggGUUGGCUUc -3'
miRNA:   3'- gCGUAgCCG-CGG---UUCUG------UAACCGAGc -5'
18441 3' -54.9 NC_004681.1 + 42046 0.66 0.800329
Target:  5'- aGCA--GGCGCCAuuGAgGUUGGCgUCu -3'
miRNA:   3'- gCGUagCCGCGGUu-CUgUAACCG-AGc -5'
18441 3' -54.9 NC_004681.1 + 62692 0.66 0.800329
Target:  5'- gCGuCGUCGGCGCCGgaugaggcGGACGgggugggGGCg-- -3'
miRNA:   3'- -GC-GUAGCCGCGGU--------UCUGUaa-----CCGagc -5'
18441 3' -54.9 NC_004681.1 + 17071 0.66 0.800329
Target:  5'- aGCAccaaCGGUGCCGguGGAUucugGGCUCa -3'
miRNA:   3'- gCGUa---GCCGCGGU--UCUGuaa-CCGAGc -5'
18441 3' -54.9 NC_004681.1 + 42127 0.66 0.790792
Target:  5'- uGCucagGUUGGCGCgCAcGAgGUUGGCgUCGa -3'
miRNA:   3'- gCG----UAGCCGCG-GUuCUgUAACCG-AGC- -5'
18441 3' -54.9 NC_004681.1 + 16368 0.67 0.781094
Target:  5'- gCGaCGagGGCGCCAAGugGgUUGcCUCGg -3'
miRNA:   3'- -GC-GUagCCGCGGUUCugU-AACcGAGC- -5'
18441 3' -54.9 NC_004681.1 + 27812 0.67 0.761264
Target:  5'- gCGCggCGGCGCCA--ACggUGGCg-- -3'
miRNA:   3'- -GCGuaGCCGCGGUucUGuaACCGagc -5'
18441 3' -54.9 NC_004681.1 + 56316 0.67 0.751151
Target:  5'- aGCAcacccaCGGCGCCAAGGCGUccaaGGUgcagCGc -3'
miRNA:   3'- gCGUa-----GCCGCGGUUCUGUAa---CCGa---GC- -5'
18441 3' -54.9 NC_004681.1 + 34696 0.67 0.751151
Target:  5'- uCGCuUCGGCGCCuucGGugcg-GGCUUGg -3'
miRNA:   3'- -GCGuAGCCGCGGu--UCuguaaCCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 18498 0.67 0.751151
Target:  5'- gGUAUCGGCGCCGAG-----GGuCUCa -3'
miRNA:   3'- gCGUAGCCGCGGUUCuguaaCC-GAGc -5'
18441 3' -54.9 NC_004681.1 + 6497 0.67 0.726425
Target:  5'- uCGCuUCGGCGCCGGGGCcuccuccccCUCGa -3'
miRNA:   3'- -GCGuAGCCGCGGUUCUGuaacc----GAGC- -5'
18441 3' -54.9 NC_004681.1 + 24841 0.68 0.709641
Target:  5'- gGCGUCGGCGgCGcGGGCGgcGGC-CGc -3'
miRNA:   3'- gCGUAGCCGCgGU-UCUGUaaCCGaGC- -5'
18441 3' -54.9 NC_004681.1 + 26611 0.68 0.709641
Target:  5'- gGCGUUGGCGUCcAGACGUU--CUCGc -3'
miRNA:   3'- gCGUAGCCGCGGuUCUGUAAccGAGC- -5'
18441 3' -54.9 NC_004681.1 + 3038 0.69 0.666955
Target:  5'- cCGCAcccgCGGCGCCAAgGGCcuggUGGCa-- -3'
miRNA:   3'- -GCGUa---GCCGCGGUU-CUGua--ACCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.