Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18441 | 3' | -54.9 | NC_004681.1 | + | 6497 | 0.67 | 0.726425 |
Target: 5'- uCGCuUCGGCGCCGGGGCcuccuccccCUCGa -3' miRNA: 3'- -GCGuAGCCGCGGUUCUGuaacc----GAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 18498 | 0.67 | 0.751151 |
Target: 5'- gGUAUCGGCGCCGAG-----GGuCUCa -3' miRNA: 3'- gCGUAGCCGCGGUUCuguaaCC-GAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 56316 | 0.67 | 0.751151 |
Target: 5'- aGCAcacccaCGGCGCCAAGGCGUccaaGGUgcagCGc -3' miRNA: 3'- gCGUa-----GCCGCGGUUCUGUAa---CCGa---GC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 34696 | 0.67 | 0.751151 |
Target: 5'- uCGCuUCGGCGCCuucGGugcg-GGCUUGg -3' miRNA: 3'- -GCGuAGCCGCGGu--UCuguaaCCGAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 27812 | 0.67 | 0.761264 |
Target: 5'- gCGCggCGGCGCCA--ACggUGGCg-- -3' miRNA: 3'- -GCGuaGCCGCGGUucUGuaACCGagc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 16368 | 0.67 | 0.781094 |
Target: 5'- gCGaCGagGGCGCCAAGugGgUUGcCUCGg -3' miRNA: 3'- -GC-GUagCCGCGGUUCugU-AACcGAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 42127 | 0.66 | 0.790792 |
Target: 5'- uGCucagGUUGGCGCgCAcGAgGUUGGCgUCGa -3' miRNA: 3'- gCG----UAGCCGCG-GUuCUgUAACCG-AGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 42046 | 0.66 | 0.800329 |
Target: 5'- aGCA--GGCGCCAuuGAgGUUGGCgUCu -3' miRNA: 3'- gCGUagCCGCGGUu-CUgUAACCG-AGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 62692 | 0.66 | 0.800329 |
Target: 5'- gCGuCGUCGGCGCCGgaugaggcGGACGgggugggGGCg-- -3' miRNA: 3'- -GC-GUAGCCGCGGU--------UCUGUaa-----CCGagc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 17488 | 0.66 | 0.800329 |
Target: 5'- gGCAUgGGCgGCCucgGAGACuuccggGUUGGCUUc -3' miRNA: 3'- gCGUAgCCG-CGG---UUCUG------UAACCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 17071 | 0.66 | 0.800329 |
Target: 5'- aGCAccaaCGGUGCCGguGGAUucugGGCUCa -3' miRNA: 3'- gCGUa---GCCGCGGU--UCUGuaa-CCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 17819 | 0.66 | 0.809697 |
Target: 5'- aCGCggCGGcCGCgCAAGGCAccGGcCUCa -3' miRNA: 3'- -GCGuaGCC-GCG-GUUCUGUaaCC-GAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 27184 | 0.66 | 0.818885 |
Target: 5'- uGCGaguggaCGGUGCCAAGACcggaGUUGGUUg- -3' miRNA: 3'- gCGUa-----GCCGCGGUUCUG----UAACCGAgc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 27868 | 0.66 | 0.827884 |
Target: 5'- cCGCGaaCGGUGgC-GGACA-UGGCUCGg -3' miRNA: 3'- -GCGUa-GCCGCgGuUCUGUaACCGAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 23933 | 0.66 | 0.827884 |
Target: 5'- aCGCugcgCGGCGCCGGaucGGCGU--GCUCa -3' miRNA: 3'- -GCGua--GCCGCGGUU---CUGUAacCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 68343 | 0.66 | 0.827884 |
Target: 5'- uCGCA-CGGCGUagucgauGAGACcgUGGCggCGu -3' miRNA: 3'- -GCGUaGCCGCGg------UUCUGuaACCGa-GC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 64243 | 0.66 | 0.827884 |
Target: 5'- aGCGUUGuGCGCCAcAGGCAUUGcaGUUUu -3' miRNA: 3'- gCGUAGC-CGCGGU-UCUGUAAC--CGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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