miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18441 3' -54.9 NC_004681.1 + 3038 0.69 0.666955
Target:  5'- cCGCAcccgCGGCGCCAAgGGCcuggUGGCa-- -3'
miRNA:   3'- -GCGUa---GCCGCGGUU-CUGua--ACCGagc -5'
18441 3' -54.9 NC_004681.1 + 57498 0.69 0.656179
Target:  5'- aGCAUCGcggagcGCGCUGAGAUGUuccUGcGCUCGa -3'
miRNA:   3'- gCGUAGC------CGCGGUUCUGUA---AC-CGAGC- -5'
18441 3' -54.9 NC_004681.1 + 7367 0.69 0.645382
Target:  5'- gCGCAcUCGGCGCCGAGGUGgacGGCcgCGu -3'
miRNA:   3'- -GCGU-AGCCGCGGUUCUGUaa-CCGa-GC- -5'
18441 3' -54.9 NC_004681.1 + 9091 0.69 0.645382
Target:  5'- cCGCGUcgucacCGGCGCCGcuGGCucgGGCUCu -3'
miRNA:   3'- -GCGUA------GCCGCGGUu-CUGuaaCCGAGc -5'
18441 3' -54.9 NC_004681.1 + 16577 0.69 0.634572
Target:  5'- gGCG-CGGCGCCGAGuagucCGUggggGGCUgGa -3'
miRNA:   3'- gCGUaGCCGCGGUUCu----GUAa---CCGAgC- -5'
18441 3' -54.9 NC_004681.1 + 25002 0.69 0.612957
Target:  5'- gGCGUCGGCGgCAAGGg--UGGCgacaCGg -3'
miRNA:   3'- gCGUAGCCGCgGUUCUguaACCGa---GC- -5'
18441 3' -54.9 NC_004681.1 + 50391 0.7 0.580675
Target:  5'- aGCGUCGGcCGCgGGGACG-UGGCcCu -3'
miRNA:   3'- gCGUAGCC-GCGgUUCUGUaACCGaGc -5'
18441 3' -54.9 NC_004681.1 + 31230 0.7 0.559346
Target:  5'- aGCGUggcugggggacCGGCGCCGAGuguUUGGCUaCGg -3'
miRNA:   3'- gCGUA-----------GCCGCGGUUCuguAACCGA-GC- -5'
18441 3' -54.9 NC_004681.1 + 18108 0.71 0.507125
Target:  5'- gGCAUCGGCGCCcccggccAGGCAccGGgUCa -3'
miRNA:   3'- gCGUAGCCGCGGu------UCUGUaaCCgAGc -5'
18441 3' -54.9 NC_004681.1 + 38233 0.71 0.504055
Target:  5'- cCGCggCGGCGCCAuaggcaccgugucaGGACccuccgGGCUCa -3'
miRNA:   3'- -GCGuaGCCGCGGU--------------UCUGuaa---CCGAGc -5'
18441 3' -54.9 NC_004681.1 + 39320 0.73 0.437825
Target:  5'- gCGCG-CGGCGCCGcgcuGGACAc-GGCUCc -3'
miRNA:   3'- -GCGUaGCCGCGGU----UCUGUaaCCGAGc -5'
18441 3' -54.9 NC_004681.1 + 37476 0.73 0.409824
Target:  5'- cCGCAUUGGCaGCCGGGAUugcauggUGGCgCGg -3'
miRNA:   3'- -GCGUAGCCG-CGGUUCUGua-----ACCGaGC- -5'
18441 3' -54.9 NC_004681.1 + 69995 0.74 0.382966
Target:  5'- aGCcucaGUCGGUaucgGCUGAGGCAUUGGUUCGu -3'
miRNA:   3'- gCG----UAGCCG----CGGUUCUGUAACCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 28446 0.74 0.365722
Target:  5'- uGCAUCGGCGCCGgggugacgaGGACAUc-GUUCGu -3'
miRNA:   3'- gCGUAGCCGCGGU---------UCUGUAacCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 6170 0.75 0.309688
Target:  5'- gCGCAUCuGCGCCGAGAUGUUGGagaaCGu -3'
miRNA:   3'- -GCGUAGcCGCGGUUCUGUAACCga--GC- -5'
18441 3' -54.9 NC_004681.1 + 39966 0.84 0.084054
Target:  5'- gCGCGUCGGCGCCGGGucaacuCAccGGCUCGg -3'
miRNA:   3'- -GCGUAGCCGCGGUUCu-----GUaaCCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 33406 1.1 0.001351
Target:  5'- cCGCAUCGGCGCCAAGACAUUGGCUCGg -3'
miRNA:   3'- -GCGUAGCCGCGGUUCUGUAACCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.