Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18441 | 3' | -54.9 | NC_004681.1 | + | 3038 | 0.69 | 0.666955 |
Target: 5'- cCGCAcccgCGGCGCCAAgGGCcuggUGGCa-- -3' miRNA: 3'- -GCGUa---GCCGCGGUU-CUGua--ACCGagc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 6170 | 0.75 | 0.309688 |
Target: 5'- gCGCAUCuGCGCCGAGAUGUUGGagaaCGu -3' miRNA: 3'- -GCGUAGcCGCGGUUCUGUAACCga--GC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 6497 | 0.67 | 0.726425 |
Target: 5'- uCGCuUCGGCGCCGGGGCcuccuccccCUCGa -3' miRNA: 3'- -GCGuAGCCGCGGUUCUGuaacc----GAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 7367 | 0.69 | 0.645382 |
Target: 5'- gCGCAcUCGGCGCCGAGGUGgacGGCcgCGu -3' miRNA: 3'- -GCGU-AGCCGCGGUUCUGUaa-CCGa-GC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 8899 | 0.69 | 0.666955 |
Target: 5'- -uCAUCGGUgaugGUCAGGGCGUUGGCg-- -3' miRNA: 3'- gcGUAGCCG----CGGUUCUGUAACCGagc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 9091 | 0.69 | 0.645382 |
Target: 5'- cCGCGUcgucacCGGCGCCGcuGGCucgGGCUCu -3' miRNA: 3'- -GCGUA------GCCGCGGUu-CUGuaaCCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 16368 | 0.67 | 0.781094 |
Target: 5'- gCGaCGagGGCGCCAAGugGgUUGcCUCGg -3' miRNA: 3'- -GC-GUagCCGCGGUUCugU-AACcGAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 16577 | 0.69 | 0.634572 |
Target: 5'- gGCG-CGGCGCCGAGuagucCGUggggGGCUgGa -3' miRNA: 3'- gCGUaGCCGCGGUUCu----GUAa---CCGAgC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 17071 | 0.66 | 0.800329 |
Target: 5'- aGCAccaaCGGUGCCGguGGAUucugGGCUCa -3' miRNA: 3'- gCGUa---GCCGCGGU--UCUGuaa-CCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 17488 | 0.66 | 0.800329 |
Target: 5'- gGCAUgGGCgGCCucgGAGACuuccggGUUGGCUUc -3' miRNA: 3'- gCGUAgCCG-CGG---UUCUG------UAACCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 17819 | 0.66 | 0.809697 |
Target: 5'- aCGCggCGGcCGCgCAAGGCAccGGcCUCa -3' miRNA: 3'- -GCGuaGCC-GCG-GUUCUGUaaCC-GAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 18108 | 0.71 | 0.507125 |
Target: 5'- gGCAUCGGCGCCcccggccAGGCAccGGgUCa -3' miRNA: 3'- gCGUAGCCGCGGu------UCUGUaaCCgAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 18498 | 0.67 | 0.751151 |
Target: 5'- gGUAUCGGCGCCGAG-----GGuCUCa -3' miRNA: 3'- gCGUAGCCGCGGUUCuguaaCC-GAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 23933 | 0.66 | 0.827884 |
Target: 5'- aCGCugcgCGGCGCCGGaucGGCGU--GCUCa -3' miRNA: 3'- -GCGua--GCCGCGGUU---CUGUAacCGAGc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 24841 | 0.68 | 0.709641 |
Target: 5'- gGCGUCGGCGgCGcGGGCGgcGGC-CGc -3' miRNA: 3'- gCGUAGCCGCgGU-UCUGUaaCCGaGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 25002 | 0.69 | 0.612957 |
Target: 5'- gGCGUCGGCGgCAAGGg--UGGCgacaCGg -3' miRNA: 3'- gCGUAGCCGCgGUUCUguaACCGa---GC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 26611 | 0.68 | 0.709641 |
Target: 5'- gGCGUUGGCGUCcAGACGUU--CUCGc -3' miRNA: 3'- gCGUAGCCGCGGuUCUGUAAccGAGC- -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 27184 | 0.66 | 0.818885 |
Target: 5'- uGCGaguggaCGGUGCCAAGACcggaGUUGGUUg- -3' miRNA: 3'- gCGUa-----GCCGCGGUUCUG----UAACCGAgc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 27812 | 0.67 | 0.761264 |
Target: 5'- gCGCggCGGCGCCA--ACggUGGCg-- -3' miRNA: 3'- -GCGuaGCCGCGGUucUGuaACCGagc -5' |
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18441 | 3' | -54.9 | NC_004681.1 | + | 27868 | 0.66 | 0.827884 |
Target: 5'- cCGCGaaCGGUGgC-GGACA-UGGCUCGg -3' miRNA: 3'- -GCGUa-GCCGCgGuUCUGUaACCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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