miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18441 3' -54.9 NC_004681.1 + 69995 0.74 0.382966
Target:  5'- aGCcucaGUCGGUaucgGCUGAGGCAUUGGUUCGu -3'
miRNA:   3'- gCG----UAGCCG----CGGUUCUGUAACCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 68343 0.66 0.827884
Target:  5'- uCGCA-CGGCGUagucgauGAGACcgUGGCggCGu -3'
miRNA:   3'- -GCGUaGCCGCGg------UUCUGuaACCGa-GC- -5'
18441 3' -54.9 NC_004681.1 + 64243 0.66 0.827884
Target:  5'- aGCGUUGuGCGCCAcAGGCAUUGcaGUUUu -3'
miRNA:   3'- gCGUAGC-CGCGGU-UCUGUAAC--CGAGc -5'
18441 3' -54.9 NC_004681.1 + 62692 0.66 0.800329
Target:  5'- gCGuCGUCGGCGCCGgaugaggcGGACGgggugggGGCg-- -3'
miRNA:   3'- -GC-GUAGCCGCGGU--------UCUGUaa-----CCGagc -5'
18441 3' -54.9 NC_004681.1 + 57498 0.69 0.656179
Target:  5'- aGCAUCGcggagcGCGCUGAGAUGUuccUGcGCUCGa -3'
miRNA:   3'- gCGUAGC------CGCGGUUCUGUA---AC-CGAGC- -5'
18441 3' -54.9 NC_004681.1 + 56316 0.67 0.751151
Target:  5'- aGCAcacccaCGGCGCCAAGGCGUccaaGGUgcagCGc -3'
miRNA:   3'- gCGUa-----GCCGCGGUUCUGUAa---CCGa---GC- -5'
18441 3' -54.9 NC_004681.1 + 50391 0.7 0.580675
Target:  5'- aGCGUCGGcCGCgGGGACG-UGGCcCu -3'
miRNA:   3'- gCGUAGCC-GCGgUUCUGUaACCGaGc -5'
18441 3' -54.9 NC_004681.1 + 42127 0.66 0.790792
Target:  5'- uGCucagGUUGGCGCgCAcGAgGUUGGCgUCGa -3'
miRNA:   3'- gCG----UAGCCGCG-GUuCUgUAACCG-AGC- -5'
18441 3' -54.9 NC_004681.1 + 42046 0.66 0.800329
Target:  5'- aGCA--GGCGCCAuuGAgGUUGGCgUCu -3'
miRNA:   3'- gCGUagCCGCGGUu-CUgUAACCG-AGc -5'
18441 3' -54.9 NC_004681.1 + 39966 0.84 0.084054
Target:  5'- gCGCGUCGGCGCCGGGucaacuCAccGGCUCGg -3'
miRNA:   3'- -GCGUAGCCGCGGUUCu-----GUaaCCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 39320 0.73 0.437825
Target:  5'- gCGCG-CGGCGCCGcgcuGGACAc-GGCUCc -3'
miRNA:   3'- -GCGUaGCCGCGGU----UCUGUaaCCGAGc -5'
18441 3' -54.9 NC_004681.1 + 38233 0.71 0.504055
Target:  5'- cCGCggCGGCGCCAuaggcaccgugucaGGACccuccgGGCUCa -3'
miRNA:   3'- -GCGuaGCCGCGGU--------------UCUGuaa---CCGAGc -5'
18441 3' -54.9 NC_004681.1 + 37476 0.73 0.409824
Target:  5'- cCGCAUUGGCaGCCGGGAUugcauggUGGCgCGg -3'
miRNA:   3'- -GCGUAGCCG-CGGUUCUGua-----ACCGaGC- -5'
18441 3' -54.9 NC_004681.1 + 34696 0.67 0.751151
Target:  5'- uCGCuUCGGCGCCuucGGugcg-GGCUUGg -3'
miRNA:   3'- -GCGuAGCCGCGGu--UCuguaaCCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 33406 1.1 0.001351
Target:  5'- cCGCAUCGGCGCCAAGACAUUGGCUCGg -3'
miRNA:   3'- -GCGUAGCCGCGGUUCUGUAACCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 31230 0.7 0.559346
Target:  5'- aGCGUggcugggggacCGGCGCCGAGuguUUGGCUaCGg -3'
miRNA:   3'- gCGUA-----------GCCGCGGUUCuguAACCGA-GC- -5'
18441 3' -54.9 NC_004681.1 + 28446 0.74 0.365722
Target:  5'- uGCAUCGGCGCCGgggugacgaGGACAUc-GUUCGu -3'
miRNA:   3'- gCGUAGCCGCGGU---------UCUGUAacCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 27868 0.66 0.827884
Target:  5'- cCGCGaaCGGUGgC-GGACA-UGGCUCGg -3'
miRNA:   3'- -GCGUa-GCCGCgGuUCUGUaACCGAGC- -5'
18441 3' -54.9 NC_004681.1 + 27812 0.67 0.761264
Target:  5'- gCGCggCGGCGCCA--ACggUGGCg-- -3'
miRNA:   3'- -GCGuaGCCGCGGUucUGuaACCGagc -5'
18441 3' -54.9 NC_004681.1 + 27184 0.66 0.818885
Target:  5'- uGCGaguggaCGGUGCCAAGACcggaGUUGGUUg- -3'
miRNA:   3'- gCGUa-----GCCGCGGUUCUG----UAACCGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.