Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 12184 | 0.66 | 0.437356 |
Target: 5'- gUCUA-CCCGG-ACCCGGCgucGGGCUUCc -3' miRNA: 3'- gAGGUaGGGCUgUGGGUCG---CCCGGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 59618 | 0.66 | 0.446517 |
Target: 5'- -aCCAgggcgCUCGACAUCCggcacguccacaAGCGGGCgUCc -3' miRNA: 3'- gaGGUa----GGGCUGUGGG------------UCGCCCGgAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 16019 | 0.66 | 0.446517 |
Target: 5'- -aUCGUCCCGGCugCUGGCaaGGGCg-- -3' miRNA: 3'- gaGGUAGGGCUGugGGUCG--CCCGgag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 58788 | 0.66 | 0.464211 |
Target: 5'- -aCCGUCgaggCGcGCGCCCAGgaguugcUGGGCCUCa -3' miRNA: 3'- gaGGUAGg---GC-UGUGGGUC-------GCCCGGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 50055 | 0.66 | 0.465152 |
Target: 5'- uCUCCGacgCCauCGACugCCuGCGGGUCg- -3' miRNA: 3'- -GAGGUa--GG--GCUGugGGuCGCCCGGag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 44126 | 0.66 | 0.465152 |
Target: 5'- cCUCaccCCCGAgGCC--GCGGGCCUg -3' miRNA: 3'- -GAGguaGGGCUgUGGguCGCCCGGAg -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 74123 | 0.66 | 0.484184 |
Target: 5'- gCUCag-CUCa--GCCCAGCGGGCCa- -3' miRNA: 3'- -GAGguaGGGcugUGGGUCGCCCGGag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 45349 | 0.66 | 0.481305 |
Target: 5'- gCUCCGacgucgagccauacUCCCG-CACCUccaaGGCGGGggagcaCCUCa -3' miRNA: 3'- -GAGGU--------------AGGGCuGUGGG----UCGCCC------GGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 17403 | 0.67 | 0.409662 |
Target: 5'- --gCGUCCCGcgggcacGCGCgCCAGCaGGGCgUCg -3' miRNA: 3'- gagGUAGGGC-------UGUG-GGUCG-CCCGgAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 37140 | 0.67 | 0.401829 |
Target: 5'- -cCCAUCaCCGAC-CCUGGCGauGGCCg- -3' miRNA: 3'- gaGGUAG-GGCUGuGGGUCGC--CCGGag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 9377 | 0.67 | 0.428304 |
Target: 5'- aUCCcgCUgGGCACCauccuGGUGGGCCa- -3' miRNA: 3'- gAGGuaGGgCUGUGGg----UCGCCCGGag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 48659 | 0.67 | 0.410538 |
Target: 5'- cCUCCAcgCUGGCgggaACCCuGGCGGGCCa- -3' miRNA: 3'- -GAGGUagGGCUG----UGGG-UCGCCCGGag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 541 | 0.67 | 0.419364 |
Target: 5'- -gCCAggUUgGACGCCCAGCGGaggcCCUCg -3' miRNA: 3'- gaGGUa-GGgCUGUGGGUCGCCc---GGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 7322 | 0.67 | 0.384766 |
Target: 5'- uUCCAccCCCGGCACCCG--GGGCUg- -3' miRNA: 3'- gAGGUa-GGGCUGUGGGUcgCCCGGag -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 2892 | 0.67 | 0.393237 |
Target: 5'- cCUCCcgCUCGAC-CCCuacauccuGgGGGCCUg -3' miRNA: 3'- -GAGGuaGGGCUGuGGGu-------CgCCCGGAg -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 31901 | 0.67 | 0.393237 |
Target: 5'- -aCC-UCgCGGCGgCCGccaucGCGGGCCUCa -3' miRNA: 3'- gaGGuAGgGCUGUgGGU-----CGCCCGGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 63832 | 0.67 | 0.401829 |
Target: 5'- gUUCGUCCCcgguuCAaauCCgGGCGGGCCUUg -3' miRNA: 3'- gAGGUAGGGcu---GU---GGgUCGCCCGGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 21270 | 0.67 | 0.410538 |
Target: 5'- gCUCCcUggCGACcCCCAGCccaaGGGCCUCc -3' miRNA: 3'- -GAGGuAggGCUGuGGGUCG----CCCGGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 24428 | 0.68 | 0.376417 |
Target: 5'- aUCCAggagaUGACACCCAGCGGcaucgacuCCUCg -3' miRNA: 3'- gAGGUagg--GCUGUGGGUCGCCc-------GGAG- -5' |
|||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 61784 | 0.68 | 0.344261 |
Target: 5'- uUCCAUCuuGGagACCuCGGCGGcgGCCUCc -3' miRNA: 3'- gAGGUAGggCUg-UGG-GUCGCC--CGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home