Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18443 | 3' | -61.7 | NC_004681.1 | + | 74123 | 0.66 | 0.484184 |
Target: 5'- gCUCag-CUCa--GCCCAGCGGGCCa- -3' miRNA: 3'- -GAGguaGGGcugUGGGUCGCCCGGag -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 64465 | 0.68 | 0.352111 |
Target: 5'- -gCCAUugucgCCC-ACGCCUuguccGCGGGCCUCa -3' miRNA: 3'- gaGGUA-----GGGcUGUGGGu----CGCCCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 63832 | 0.67 | 0.401829 |
Target: 5'- gUUCGUCCCcgguuCAaauCCgGGCGGGCCUUg -3' miRNA: 3'- gAGGUAGGGcu---GU---GGgUCGCCCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 61784 | 0.68 | 0.344261 |
Target: 5'- uUCCAUCuuGGagACCuCGGCGGcgGCCUCc -3' miRNA: 3'- gAGGUAGggCUg-UGG-GUCGCC--CGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 59618 | 0.66 | 0.446517 |
Target: 5'- -aCCAgggcgCUCGACAUCCggcacguccacaAGCGGGCgUCc -3' miRNA: 3'- gaGGUa----GGGCUGUGGG------------UCGCCCGgAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 58788 | 0.66 | 0.464211 |
Target: 5'- -aCCGUCgaggCGcGCGCCCAGgaguugcUGGGCCUCa -3' miRNA: 3'- gaGGUAGg---GC-UGUGGGUC-------GCCCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 50055 | 0.66 | 0.465152 |
Target: 5'- uCUCCGacgCCauCGACugCCuGCGGGUCg- -3' miRNA: 3'- -GAGGUa--GG--GCUGugGGuCGCCCGGag -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 48659 | 0.67 | 0.410538 |
Target: 5'- cCUCCAcgCUGGCgggaACCCuGGCGGGCCa- -3' miRNA: 3'- -GAGGUagGGCUG----UGGG-UCGCCCGGag -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 45349 | 0.66 | 0.481305 |
Target: 5'- gCUCCGacgucgagccauacUCCCG-CACCUccaaGGCGGGggagcaCCUCa -3' miRNA: 3'- -GAGGU--------------AGGGCuGUGGG----UCGCCC------GGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 44126 | 0.66 | 0.465152 |
Target: 5'- cCUCaccCCCGAgGCC--GCGGGCCUg -3' miRNA: 3'- -GAGguaGGGCUgUGGguCGCCCGGAg -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 37140 | 0.67 | 0.401829 |
Target: 5'- -cCCAUCaCCGAC-CCUGGCGauGGCCg- -3' miRNA: 3'- gaGGUAG-GGCUGuGGGUCGC--CCGGag -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 36393 | 0.69 | 0.292866 |
Target: 5'- -aCCAUCuCCGAUACuuuCCAGCGcGGCUUUu -3' miRNA: 3'- gaGGUAG-GGCUGUG---GGUCGC-CCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 35257 | 1.09 | 0.000351 |
Target: 5'- gCUCCAUCCCGACACCCAGCGGGCCUCg -3' miRNA: 3'- -GAGGUAGGGCUGUGGGUCGCCCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 32113 | 0.73 | 0.165897 |
Target: 5'- -gCCGUgCCGACACCC-GCGGcGCCg- -3' miRNA: 3'- gaGGUAgGGCUGUGGGuCGCC-CGGag -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 31901 | 0.67 | 0.393237 |
Target: 5'- -aCC-UCgCGGCGgCCGccaucGCGGGCCUCa -3' miRNA: 3'- gaGGuAGgGCUGUgGGU-----CGCCCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 26837 | 0.68 | 0.368191 |
Target: 5'- gCUUCGUuaCCUGGgACCgCAGUGGGCCg- -3' miRNA: 3'- -GAGGUA--GGGCUgUGG-GUCGCCCGGag -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 24428 | 0.68 | 0.376417 |
Target: 5'- aUCCAggagaUGACACCCAGCGGcaucgacuCCUCg -3' miRNA: 3'- gAGGUagg--GCUGUGGGUCGCCc-------GGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 21270 | 0.67 | 0.410538 |
Target: 5'- gCUCCcUggCGACcCCCAGCccaaGGGCCUCc -3' miRNA: 3'- -GAGGuAggGCUGuGGGUCG----CCCGGAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 17403 | 0.67 | 0.409662 |
Target: 5'- --gCGUCCCGcgggcacGCGCgCCAGCaGGGCgUCg -3' miRNA: 3'- gagGUAGGGC-------UGUG-GGUCG-CCCGgAG- -5' |
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18443 | 3' | -61.7 | NC_004681.1 | + | 16019 | 0.66 | 0.446517 |
Target: 5'- -aUCGUCCCGGCugCUGGCaaGGGCg-- -3' miRNA: 3'- gaGGUAGGGCUGugGGUCG--CCCGgag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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