miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18443 3' -61.7 NC_004681.1 + 12333 0.7 0.259958
Target:  5'- -gCCA-CCCGACucaGCCCAGaaCGGGCCa- -3'
miRNA:   3'- gaGGUaGGGCUG---UGGGUC--GCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 32113 0.73 0.165897
Target:  5'- -gCCGUgCCGACACCC-GCGGcGCCg- -3'
miRNA:   3'- gaGGUAgGGCUGUGGGuCGCC-CGGag -5'
18443 3' -61.7 NC_004681.1 + 15325 0.74 0.145798
Target:  5'- aUCUgcuUCauGACGCCCAGCGGGCCg- -3'
miRNA:   3'- gAGGu--AGggCUGUGGGUCGCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 17403 0.67 0.409662
Target:  5'- --gCGUCCCGcgggcacGCGCgCCAGCaGGGCgUCg -3'
miRNA:   3'- gagGUAGGGC-------UGUG-GGUCG-CCCGgAG- -5'
18443 3' -61.7 NC_004681.1 + 24428 0.68 0.376417
Target:  5'- aUCCAggagaUGACACCCAGCGGcaucgacuCCUCg -3'
miRNA:   3'- gAGGUagg--GCUGUGGGUCGCCc-------GGAG- -5'
18443 3' -61.7 NC_004681.1 + 64465 0.68 0.352111
Target:  5'- -gCCAUugucgCCC-ACGCCUuguccGCGGGCCUCa -3'
miRNA:   3'- gaGGUA-----GGGcUGUGGGu----CGCCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 590 0.71 0.213653
Target:  5'- gUCCAgCuuGACGCCCAGCaucucggccaGGcGCCUCc -3'
miRNA:   3'- gAGGUaGggCUGUGGGUCG----------CC-CGGAG- -5'
18443 3' -61.7 NC_004681.1 + 74123 0.66 0.484184
Target:  5'- gCUCag-CUCa--GCCCAGCGGGCCa- -3'
miRNA:   3'- -GAGguaGGGcugUGGGUCGCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 37140 0.67 0.401829
Target:  5'- -cCCAUCaCCGAC-CCUGGCGauGGCCg- -3'
miRNA:   3'- gaGGUAG-GGCUGuGGGUCGC--CCGGag -5'
18443 3' -61.7 NC_004681.1 + 61784 0.68 0.344261
Target:  5'- uUCCAUCuuGGagACCuCGGCGGcgGCCUCc -3'
miRNA:   3'- gAGGUAGggCUg-UGG-GUCGCC--CGGAG- -5'
18443 3' -61.7 NC_004681.1 + 6556 0.7 0.272746
Target:  5'- ---aGUCCCGGCACCgaGGCGGGCg-- -3'
miRNA:   3'- gaggUAGGGCUGUGGg-UCGCCCGgag -5'
18443 3' -61.7 NC_004681.1 + 9967 0.69 0.299826
Target:  5'- aCUUCGUCUCcACGCCUgcGGUGGGCCg- -3'
miRNA:   3'- -GAGGUAGGGcUGUGGG--UCGCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 541 0.67 0.419364
Target:  5'- -gCCAggUUgGACGCCCAGCGGaggcCCUCg -3'
miRNA:   3'- gaGGUa-GGgCUGUGGGUCGCCc---GGAG- -5'
18443 3' -61.7 NC_004681.1 + 36393 0.69 0.292866
Target:  5'- -aCCAUCuCCGAUACuuuCCAGCGcGGCUUUu -3'
miRNA:   3'- gaGGUAG-GGCUGUG---GGUCGC-CCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 2892 0.67 0.393237
Target:  5'- cCUCCcgCUCGAC-CCCuacauccuGgGGGCCUg -3'
miRNA:   3'- -GAGGuaGGGCUGuGGGu-------CgCCCGGAg -5'
18443 3' -61.7 NC_004681.1 + 58788 0.66 0.464211
Target:  5'- -aCCGUCgaggCGcGCGCCCAGgaguugcUGGGCCUCa -3'
miRNA:   3'- gaGGUAGg---GC-UGUGGGUC-------GCCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 16019 0.66 0.446517
Target:  5'- -aUCGUCCCGGCugCUGGCaaGGGCg-- -3'
miRNA:   3'- gaGGUAGGGCUGugGGUCG--CCCGgag -5'
18443 3' -61.7 NC_004681.1 + 59618 0.66 0.446517
Target:  5'- -aCCAgggcgCUCGACAUCCggcacguccacaAGCGGGCgUCc -3'
miRNA:   3'- gaGGUa----GGGCUGUGGG------------UCGCCCGgAG- -5'
18443 3' -61.7 NC_004681.1 + 12184 0.66 0.437356
Target:  5'- gUCUA-CCCGG-ACCCGGCgucGGGCUUCc -3'
miRNA:   3'- gAGGUaGGGCUgUGGGUCG---CCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 31901 0.67 0.393237
Target:  5'- -aCC-UCgCGGCGgCCGccaucGCGGGCCUCa -3'
miRNA:   3'- gaGGuAGgGCUGUgGGU-----CGCCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.