miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18443 3' -61.7 NC_004681.1 + 7322 0.67 0.384766
Target:  5'- uUCCAccCCCGGCACCCG--GGGCUg- -3'
miRNA:   3'- gAGGUa-GGGCUGUGGGUcgCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 2892 0.67 0.393237
Target:  5'- cCUCCcgCUCGAC-CCCuacauccuGgGGGCCUg -3'
miRNA:   3'- -GAGGuaGGGCUGuGGGu-------CgCCCGGAg -5'
18443 3' -61.7 NC_004681.1 + 31901 0.67 0.393237
Target:  5'- -aCC-UCgCGGCGgCCGccaucGCGGGCCUCa -3'
miRNA:   3'- gaGGuAGgGCUGUgGGU-----CGCCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 63832 0.67 0.401829
Target:  5'- gUUCGUCCCcgguuCAaauCCgGGCGGGCCUUg -3'
miRNA:   3'- gAGGUAGGGcu---GU---GGgUCGCCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 21270 0.67 0.410538
Target:  5'- gCUCCcUggCGACcCCCAGCccaaGGGCCUCc -3'
miRNA:   3'- -GAGGuAggGCUGuGGGUCG----CCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 48659 0.67 0.410538
Target:  5'- cCUCCAcgCUGGCgggaACCCuGGCGGGCCa- -3'
miRNA:   3'- -GAGGUagGGCUG----UGGG-UCGCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 9377 0.67 0.428304
Target:  5'- aUCCcgCUgGGCACCauccuGGUGGGCCa- -3'
miRNA:   3'- gAGGuaGGgCUGUGGg----UCGCCCGGag -5'
18443 3' -61.7 NC_004681.1 + 12184 0.66 0.437356
Target:  5'- gUCUA-CCCGG-ACCCGGCgucGGGCUUCc -3'
miRNA:   3'- gAGGUaGGGCUgUGGGUCG---CCCGGAG- -5'
18443 3' -61.7 NC_004681.1 + 59618 0.66 0.446517
Target:  5'- -aCCAgggcgCUCGACAUCCggcacguccacaAGCGGGCgUCc -3'
miRNA:   3'- gaGGUa----GGGCUGUGGG------------UCGCCCGgAG- -5'
18443 3' -61.7 NC_004681.1 + 16019 0.66 0.446517
Target:  5'- -aUCGUCCCGGCugCUGGCaaGGGCg-- -3'
miRNA:   3'- gaGGUAGGGCUGugGGUCG--CCCGgag -5'
18443 3' -61.7 NC_004681.1 + 35257 1.09 0.000351
Target:  5'- gCUCCAUCCCGACACCCAGCGGGCCUCg -3'
miRNA:   3'- -GAGGUAGGGCUGUGGGUCGCCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.