miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18444 3' -59.6 NC_004681.1 + 39296 0.66 0.614117
Target:  5'- aGGCUGacgUCCUCGACgucgaGGGCGagcaucUCCGCg -3'
miRNA:   3'- -CCGGCcuaAGGAGCUG-----CCCGU------GGGUG- -5'
18444 3' -59.6 NC_004681.1 + 14450 0.66 0.613078
Target:  5'- cGGgCGGAgguggCCUCGAUGuucuuGGCgcgcagcucauugGCCCGCg -3'
miRNA:   3'- -CCgGCCUaa---GGAGCUGC-----CCG-------------UGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 17015 0.66 0.603741
Target:  5'- uGGCCuucuGGAUgucaUCCUCGGUGGcGaCACCCGa -3'
miRNA:   3'- -CCGG----CCUA----AGGAGCUGCC-C-GUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 62024 0.66 0.603741
Target:  5'- cGGCCGuGGgacaCCUCuGACcgucccaaGGGCACgCACa -3'
miRNA:   3'- -CCGGC-CUaa--GGAG-CUG--------CCCGUGgGUG- -5'
18444 3' -59.6 NC_004681.1 + 44847 0.66 0.603741
Target:  5'- cGCCcgcgagGGAgUCCUCGACGucgaaGGCGCCgCAg -3'
miRNA:   3'- cCGG------CCUaAGGAGCUGC-----CCGUGG-GUg -5'
18444 3' -59.6 NC_004681.1 + 49011 0.66 0.593388
Target:  5'- uGCUGGAUggUCUUGuACGGGacgguCCCGCg -3'
miRNA:   3'- cCGGCCUAa-GGAGC-UGCCCgu---GGGUG- -5'
18444 3' -59.6 NC_004681.1 + 2996 0.66 0.593388
Target:  5'- aGCCGGAUacccgcucUCCUaCGacuacgccaGCGGcaaugcccGCACCCGCg -3'
miRNA:   3'- cCGGCCUA--------AGGA-GC---------UGCC--------CGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 44491 0.66 0.583063
Target:  5'- uGGCgaggaGGGUgaguugCC-CgGACGGGCGCCCGu -3'
miRNA:   3'- -CCGg----CCUAa-----GGaG-CUGCCCGUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 8392 0.66 0.583063
Target:  5'- aGGCCG---UCCUUGGCG-GCGUCCGCg -3'
miRNA:   3'- -CCGGCcuaAGGAGCUGCcCGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 14759 0.66 0.583063
Target:  5'- aGGCCGGuUUCCgUGACGccgcGGaCGCCCu- -3'
miRNA:   3'- -CCGGCCuAAGGaGCUGC----CC-GUGGGug -5'
18444 3' -59.6 NC_004681.1 + 17921 0.66 0.572776
Target:  5'- aGGCCGGug-CCUUG-CGcGGC-CgCCGCg -3'
miRNA:   3'- -CCGGCCuaaGGAGCuGC-CCGuG-GGUG- -5'
18444 3' -59.6 NC_004681.1 + 12547 0.66 0.562531
Target:  5'- uGGCCGGgg-CCUCGACGGugaucguCACUuCGCc -3'
miRNA:   3'- -CCGGCCuaaGGAGCUGCCc------GUGG-GUG- -5'
18444 3' -59.6 NC_004681.1 + 24961 0.66 0.562531
Target:  5'- uGCUGGugagggagCCUUGGCGGccgcCGCCCGCg -3'
miRNA:   3'- cCGGCCuaa-----GGAGCUGCCc---GUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 6488 0.67 0.55132
Target:  5'- cGCCGGGgccuccucccCCUCGacagcgccaucggGCGuGGCGCCCAa -3'
miRNA:   3'- cCGGCCUaa--------GGAGC-------------UGC-CCGUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 461 0.67 0.542198
Target:  5'- cGCgGGcucgUCCUCG-CGgauGGCGCCCAUg -3'
miRNA:   3'- cCGgCCua--AGGAGCuGC---CCGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 48668 0.67 0.542198
Target:  5'- uGGCgGGAacCCU-GGCGGGCcagcuCCCAUg -3'
miRNA:   3'- -CCGgCCUaaGGAgCUGCCCGu----GGGUG- -5'
18444 3' -59.6 NC_004681.1 + 47757 0.67 0.536145
Target:  5'- uGGCCaGAUgaagaaCCUCGaugccgcauucacccGCGaGGCGCCCAa -3'
miRNA:   3'- -CCGGcCUAa-----GGAGC---------------UGC-CCGUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 39101 0.67 0.522115
Target:  5'- aGGCCGucGAcguugacgccUUCCUCGuCGGcCACCCAg -3'
miRNA:   3'- -CCGGC--CU----------AAGGAGCuGCCcGUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 8543 0.67 0.522115
Target:  5'- cGGCCaGAaccccUUCggUUCGACGGGUACCUuCg -3'
miRNA:   3'- -CCGGcCU-----AAG--GAGCUGCCCGUGGGuG- -5'
18444 3' -59.6 NC_004681.1 + 13695 0.67 0.512181
Target:  5'- aGCUGGAcgUCaUUGGCGuGGCcGCCCGCg -3'
miRNA:   3'- cCGGCCUa-AGgAGCUGC-CCG-UGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.