miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18444 3' -59.6 NC_004681.1 + 328 0.69 0.397734
Target:  5'- uGCCGGAUUUCUgCGAgggcugcaccgucaUGGGCGCCaucCGCg -3'
miRNA:   3'- cCGGCCUAAGGA-GCU--------------GCCCGUGG---GUG- -5'
18444 3' -59.6 NC_004681.1 + 461 0.67 0.542198
Target:  5'- cGCgGGcucgUCCUCG-CGgauGGCGCCCAUg -3'
miRNA:   3'- cCGgCCua--AGGAGCuGC---CCGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 530 0.72 0.291274
Target:  5'- cGGCCGcGAgUCCcucaaCGACGGGCACaaGCu -3'
miRNA:   3'- -CCGGC-CUaAGGa----GCUGCCCGUGggUG- -5'
18444 3' -59.6 NC_004681.1 + 710 0.71 0.327354
Target:  5'- aGGCgCGGAggaagUUCUCGACGgcgucgauGGCGCCCu- -3'
miRNA:   3'- -CCG-GCCUa----AGGAGCUGC--------CCGUGGGug -5'
18444 3' -59.6 NC_004681.1 + 2996 0.66 0.593388
Target:  5'- aGCCGGAUacccgcucUCCUaCGacuacgccaGCGGcaaugcccGCACCCGCg -3'
miRNA:   3'- cCGGCCUA--------AGGA-GC---------UGCC--------CGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 6488 0.67 0.55132
Target:  5'- cGCCGGGgccuccucccCCUCGacagcgccaucggGCGuGGCGCCCAa -3'
miRNA:   3'- cCGGCCUaa--------GGAGC-------------UGC-CCGUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 7578 0.71 0.312537
Target:  5'- cGGCCGGGgaggCCgUGAU-GGCACCUACg -3'
miRNA:   3'- -CCGGCCUaa--GGaGCUGcCCGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 8392 0.66 0.583063
Target:  5'- aGGCCG---UCCUUGGCG-GCGUCCGCg -3'
miRNA:   3'- -CCGGCcuaAGGAGCUGCcCGUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 8543 0.67 0.522115
Target:  5'- cGGCCaGAaccccUUCggUUCGACGGGUACCUuCg -3'
miRNA:   3'- -CCGGcCU-----AAG--GAGCUGCCCGUGGGuG- -5'
18444 3' -59.6 NC_004681.1 + 12547 0.66 0.562531
Target:  5'- uGGCCGGgg-CCUCGACGGugaucguCACUuCGCc -3'
miRNA:   3'- -CCGGCCuaaGGAGCUGCCc------GUGG-GUG- -5'
18444 3' -59.6 NC_004681.1 + 13403 0.68 0.492555
Target:  5'- cGGCCucGAUcUCCaggcUCGACaGGGCGCCCuCg -3'
miRNA:   3'- -CCGGc-CUA-AGG----AGCUG-CCCGUGGGuG- -5'
18444 3' -59.6 NC_004681.1 + 13695 0.67 0.512181
Target:  5'- aGCUGGAcgUCaUUGGCGuGGCcGCCCGCg -3'
miRNA:   3'- cCGGCCUa-AGgAGCUGC-CCG-UGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 14450 0.66 0.613078
Target:  5'- cGGgCGGAgguggCCUCGAUGuucuuGGCgcgcagcucauugGCCCGCg -3'
miRNA:   3'- -CCgGCCUaa---GGAGCUGC-----CCG-------------UGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 14759 0.66 0.583063
Target:  5'- aGGCCGGuUUCCgUGACGccgcGGaCGCCCu- -3'
miRNA:   3'- -CCGGCCuAAGGaGCUGC----CC-GUGGGug -5'
18444 3' -59.6 NC_004681.1 + 16620 0.68 0.445107
Target:  5'- aGGCCGcGAUggaggCGGCGGGCaucaGCCCGg -3'
miRNA:   3'- -CCGGC-CUAagga-GCUGCCCG----UGGGUg -5'
18444 3' -59.6 NC_004681.1 + 17015 0.66 0.603741
Target:  5'- uGGCCuucuGGAUgucaUCCUCGGUGGcGaCACCCGa -3'
miRNA:   3'- -CCGG----CCUA----AGGAGCUGCC-C-GUGGGUg -5'
18444 3' -59.6 NC_004681.1 + 17921 0.66 0.572776
Target:  5'- aGGCCGGug-CCUUG-CGcGGC-CgCCGCg -3'
miRNA:   3'- -CCGGCCuaaGGAGCuGC-CCGuG-GGUG- -5'
18444 3' -59.6 NC_004681.1 + 18291 0.69 0.417897
Target:  5'- cGGCCGcagUCCUCGACuGGCGgUCAg -3'
miRNA:   3'- -CCGGCcuaAGGAGCUGcCCGUgGGUg -5'
18444 3' -59.6 NC_004681.1 + 24961 0.66 0.562531
Target:  5'- uGCUGGugagggagCCUUGGCGGccgcCGCCCGCg -3'
miRNA:   3'- cCGGCCuaa-----GGAGCUGCCc---GUGGGUG- -5'
18444 3' -59.6 NC_004681.1 + 26257 0.67 0.502326
Target:  5'- gGGCaugaCGGAcUCCUCGGCGG-CAUcaCCACc -3'
miRNA:   3'- -CCG----GCCUaAGGAGCUGCCcGUG--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.